Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0649
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi...    28   5.7  
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil...    27   7.5  
At1g52990.1 68414.m05997 thioredoxin family protein similar to S...    27   10.0 

>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 633

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 10  VLYEYDDKKRKI*LNIHLNQINKSF*CDNTPRHLTTYLKKGI 135
           V+   D ++R++ L  H  +I  +F   NTP   T ++KK I
Sbjct: 549 VIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNI 590


>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646; supporting cDNA
           gi|13160645|dbj|AB036832.1|;
          Length = 876

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 93  QYSKTLNHIFKERNTTAKTPQRIINSPAECAQ 188
           Q SKTL+HI K  +T  K PQ  +   A+ A+
Sbjct: 421 QESKTLDHIGKVTDTEHKVPQERVEIDADQAK 452


>At1g52990.1 68414.m05997 thioredoxin family protein similar to
           SP|P48384 Thioredoxin M-type, chloroplast precursor
           (TRX-M) {Pisum sativum}; contains Pfam profile PF00085:
           Thioredoxin
          Length = 313

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 321 EYVIQMQRSSLFVPTIMRIASFKKSRQYGVFCCCPH 428
           E++   +  +    T+++ A  K S Q+ +F CCPH
Sbjct: 153 EFIFTHREQNQCADTLVKKA-IKSSTQWSLFNCCPH 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,078,341
Number of Sequences: 28952
Number of extensions: 228514
Number of successful extensions: 436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)