Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0648
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;...    63   7e-09
UniRef50_Q89UH4 Cluster: Blr1443 protein; n=3; Bradyrhizobium|Re...    36   1.2  
UniRef50_Q5GU94 Cluster: Hemagglutinin; n=1; Xanthomonas oryzae ...    33   6.5  

>UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 133

 Score = 62.9 bits (146), Expect = 7e-09
 Identities = 50/123 (40%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
 Frame = +2

Query: 260 MAFMMPVVKNDWDIYNSQXXXXXXXXXXKAGFNVGGRVRKISE-SRSEGPAL--SPRSAG 430
           MAFMMPV+KN+WDIY +                   R RK+SE S+SEGP+L  SP S  
Sbjct: 1   MAFMMPVMKNEWDIYKTNRSRRSSECSNPQAC----RSRKVSECSKSEGPSLSTSPGSDF 56

Query: 431 L-SP-HRSAP-AMRSLSYCRAPHSRVSLRAAXXXXXXXXXXXXXXAREEKFHSRLVEKLK 601
           L SP HRS P   R  S   +  S+ SL++                   KFH+RLV+KLK
Sbjct: 57  LTSPAHRSVPLTSRHFSRTSSRASQNSLQSPSKSTGSSPPKTGSSNSLNKFHNRLVDKLK 116

Query: 602 RAL 610
           R+L
Sbjct: 117 RSL 119


>UniRef50_Q89UH4 Cluster: Blr1443 protein; n=3; Bradyrhizobium|Rep:
           Blr1443 protein - Bradyrhizobium japonicum
          Length = 275

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -3

Query: 319 GPLRVVYVPIVLHYWHHERHLGEGGGDSFVGTF 221
           GP + V    V H WHH   L EGG  +F GTF
Sbjct: 202 GPFKYVLATPVFHRWHH-TSLEEGGDTNFAGTF 233


>UniRef50_Q5GU94 Cluster: Hemagglutinin; n=1; Xanthomonas oryzae pv.
           oryzae|Rep: Hemagglutinin - Xanthomonas oryzae pv.
           oryzae
          Length = 998

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 339 RRRRGSTWEAGCGKYRSHGPKARRCH 416
           R R G    AG G+YR H P+ R CH
Sbjct: 750 RGRCGGCGTAGLGRYRHHHPRGRHCH 775


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,557,641
Number of Sequences: 1657284
Number of extensions: 10085823
Number of successful extensions: 30247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30233
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)