Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0648
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0536 + 21906583-21908037                                         30   2.0  
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756...    29   3.5  
04_04_0095 - 22775340-22776017                                         29   4.6  
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98...    28   6.0  
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508...    28   6.0  

>06_03_0536 + 21906583-21908037
          Length = 484

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -1

Query: 681 CARPAHKHALTHELLSSRRDSER----PSARFNFSTNLLWNFS 565
           C  P H  A  H LLS      R    P  R N S+NL+W  S
Sbjct: 357 CMHPLHVTAFCHRLLSGDEREWRPVCMPEHRSNISSNLVWTES 399


>03_05_0232 +
           22174516-22174768,22175278-22175471,22175557-22175604,
           22176707-22176784,22178073-22178145,22178406-22178577,
           22179652-22180083,22180209-22180400,22180696-22180771
          Length = 505

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 548 ADYPNPCWGCLAPHAARLASEARDSTTTSASPE 450
           +DYP   WG  AP+ A  A+E   ST T AS +
Sbjct: 151 SDYPRLFWGAFAPNTASGATE--QSTITCASSQ 181


>04_04_0095 - 22775340-22776017
          Length = 225

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 413 SPRSAGLSPHRSAPAMRSLSYCRAPHSRVSLR 508
           +P S+G +  R +PA R LS C+AP   V +R
Sbjct: 141 APASSGSTWLRLSPACRELSGCKAPKLLVEVR 172


>05_01_0148 -
           985745-986180,986290-986385,986498-986694,986824-986919,
           987020-987059,987751-987857
          Length = 323

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +2

Query: 365 GRVRKISESRSEGPALS---PRSAGLSPH--RSAPAMRSLSYCRAPHSRVS 502
           GR R  S SRS   + S    RS   SP   R     RSLSY R+P   +S
Sbjct: 163 GRSRSYSRSRSRSRSYSRSRSRSLSGSPRARRELERSRSLSYSRSPRRSIS 213


>03_05_0176 +
           21546952-21547887,21548856-21548921,21549959-21550877,
           21551277-21551449,21551927-21552475
          Length = 880

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 238 SFVGTFLEKLPPLRRNKICSRKLTLRSIMILIFFFTECLY-FRKIS 104
           S  GTF    P +  +K C+RK+ + S  ++++  T CL  F+ +S
Sbjct: 204 SKAGTFRWMAPEMIHDKRCNRKVDVYSFGLVLWELTTCLVPFQNLS 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,428
Number of Sequences: 37544
Number of extensions: 291296
Number of successful extensions: 993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)