Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0648
         (687 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC108915-1|AAI08916.1|  258|Homo sapiens VENT homeobox homolog (...    31   5.1  
BC005186-1|AAH05186.1|  142|Homo sapiens mitochondrial ribosomal...    31   5.1  
AF151892-1|AAD34129.1|  142|Homo sapiens CGI-134 protein protein.      31   5.1  
U12170-1|AAA20602.1| 1124|Homo sapiens zinc finger homeodomain p...    30   8.9  

>BC108915-1|AAI08916.1|  258|Homo sapiens VENT homeobox homolog
           (Xenopus laevis) protein.
          Length = 258

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 365 GRVRKISESRSEGPALSPRSAGLSPHRSAPAMRSLSYCRAPHSRVSLRAA 514
           G V  +S+S   GP  +PR A  SP  S P     S  R P   VS++ A
Sbjct: 18  GSVDWLSQSSCSGPTHTPRPADFSP-GSLPGPGQTSGAREPPQAVSIKEA 66


>BC005186-1|AAH05186.1|  142|Homo sapiens mitochondrial ribosomal
           protein S18C protein.
          Length = 142

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 205 PLRRNKICSRKLTLRSIMILIFF---FTECLYFRKISGFC 95
           PL++  +C + +  +++ +L  F   FT C+Y R I+G C
Sbjct: 61  PLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLC 100


>AF151892-1|AAD34129.1|  142|Homo sapiens CGI-134 protein protein.
          Length = 142

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 205 PLRRNKICSRKLTLRSIMILIFF---FTECLYFRKISGFC 95
           PL++  +C + +  +++ +L  F   FT C+Y R I+G C
Sbjct: 61  PLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLC 100


>U12170-1|AAA20602.1| 1124|Homo sapiens zinc finger homeodomain
           protein protein.
          Length = 1124

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -2

Query: 572 TSPRALLPADYPNPCWGCLAPHAARLASEARDSTTTSASPERCGED*ALPIVVTTPGLRT 393
           + P +  P     P      P +A  A+E +DST    SP +      LP+  TT G R+
Sbjct: 642 SEPSSPEPGKVNTPAKNNDQPQSAN-ANEPQDSTVNLQSPLKMTNSPVLPVGSTTNGSRS 700

Query: 392 VTP 384
            TP
Sbjct: 701 STP 703


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,112,060
Number of Sequences: 237096
Number of extensions: 1471283
Number of successful extensions: 4269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4269
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)