Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0646
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   1.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   1.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   1.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.4  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   4.4  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 92  LSASVPCGVNSTSNSPL 42
           LS + PC +NSTS+ P+
Sbjct: 177 LSWNNPCSINSTSSQPV 193


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAF 15
           PS      D  S   V +P  +   G  APP      S P   N+T +S L + LS S  
Sbjct: 95  PSASCKYADSTSSTGVASPQDLSTNG--APPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152

Query: 14  SP 9
            P
Sbjct: 153 PP 154


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAF 15
           PS      D  S   V +P  +   G  APP      S P   N+T +S L + LS S  
Sbjct: 95  PSASCKYADSTSSTGVASPQDLSTNG--APPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152

Query: 14  SP 9
            P
Sbjct: 153 PP 154


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAF 15
           PS      D  S   V +P  +   G  APP      S P   N+T +S L + LS S  
Sbjct: 95  PSASCKYADSTSSTGVASPQDLSTNG--APPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152

Query: 14  SP 9
            P
Sbjct: 153 PP 154


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAF 15
           PS      D  S   V +P  +   G  APP      S P   N+T +S L + LS S  
Sbjct: 95  PSASCKYADSTSSTGVASPQDLSTNG--APPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152

Query: 14  SP 9
            P
Sbjct: 153 PP 154


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAF 15
           PS      D  S   V +P  +   G  APP      S P   N+T +S L + LS S  
Sbjct: 95  PSASCKYADSTSSTGVASPQDLSTNG--APPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152

Query: 14  SP 9
            P
Sbjct: 153 PP 154


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAF 15
           PS      D  S   V +P  +   G  APP      S P   N+T +S L + LS S  
Sbjct: 51  PSASCKYADSTSSTGVASPQDLSTNG--APPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 108

Query: 14  SP 9
            P
Sbjct: 109 PP 110


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAF 15
           PS      D  S   V +P  +   G  APP      S P   N+T +S L + LS S  
Sbjct: 95  PSASCKYADSTSSTGVASPQDLSTNG--APPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152

Query: 14  SP 9
            P
Sbjct: 153 PP 154


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAF 15
           PS      D  S   V +P  +   G  APP      S P   N+T +S L + LS S  
Sbjct: 95  PSASCKYADSTSSTGVASPQDLSTNG--APPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152

Query: 14  SP 9
            P
Sbjct: 153 PP 154


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAF 15
           PS      D  S   V +P  +   G  APP      S P   N+T +S L + LS S  
Sbjct: 95  PSASCKYADSTSSTGVASPQDLSTNG--APPRSTPPLSTPSNSNATKSSGLTSPLSVSTS 152

Query: 14  SP 9
            P
Sbjct: 153 PP 154


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -3

Query: 185 VYLIGDPPS*IKVPNPVGVKKAGIPA--PPARILSASVPCGVNSTSNSPL 42
           +Y    PP+      P+       PA  PP    S+  P  V S +++PL
Sbjct: 6   IYEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPL 55


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 129 KKGRNTCTSCTYSFCQC 79
           +KG+ TC + + ++C C
Sbjct: 34  QKGQKTCLNLSINYCIC 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,382
Number of Sequences: 336
Number of extensions: 3967
Number of successful extensions: 23
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)