Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0646
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    30   0.29 
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    29   0.67 
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    28   1.2  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    27   3.6  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    27   3.6  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    26   4.7  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   8.2  

>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 244 NNYVMEEAITGDFAFVKAWKADKHGNLIFRKSA 342
           N ++M + IT  +AF +  K ++HG++  RK A
Sbjct: 162 NQFLMNKPITVSYAFKREGKGERHGDIAERKLA 194


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 433 HVPSIYVHRIIKEDNFEKRIERKTTRKPNQTSKSTDSLREKIIRRAALEFK 585
           H+ S +V  + KED FEK     T     + S++++SL +K  R + L FK
Sbjct: 453 HLASTFVQDVGKEDVFEK--TSITISNEERKSRNSESLPKKKKRLSMLSFK 501


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 133 PTGFGTLIQEGGSPIKYTKDGKI 201
           PTG   ++ +G   IK TKDGK+
Sbjct: 38  PTGTTKMLVDGAGAIKLTKDGKV 60


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 104 PARILSASVPCGVNSTSNSPLKNCLSNSAFS-PT 6
           PA + S SVP G  +  N+P ++ +S  +FS PT
Sbjct: 31  PAVVSSPSVPEGTYTVLNNPKQSTVSRKSFSAPT 64


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 607 GIGMPMLASNYIPENVKVLLQSENGILGLGPFPTEEEV 720
           G+G      N +  N + L+Q ++GI+ L  FP  E++
Sbjct: 8   GLGAVTPLGNGVKTNWRNLIQGKSGIVSLKGFPEYEQI 45


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 199 IDIPSSARFVQQFNGNNYVMEE 264
           ++IP+ AR  QQF   N +ME+
Sbjct: 120 MNIPAMARITQQFERENEIMEQ 141


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 110 APPARILSASVPCGVNSTSNSPLKNCLSNSAFSPT 6
           A P+ + S S+P   ++TSN    N   +S FSPT
Sbjct: 246 ANPSTLFS-SIPSSRHTTSNHFPSNSAQSSLFSPT 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,488
Number of Sequences: 5004
Number of extensions: 65075
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)