Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0646
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0593 + 34946665-34946952,34947484-34947798,34948246-349483...    29   4.9  
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     29   4.9  
09_04_0696 - 19559227-19559622,19559710-19559862,19559957-195607...    28   8.6  
01_04_0098 - 15989906-15989912,15990008-15990082,15990159-159902...    28   8.6  

>03_06_0593 +
           34946665-34946952,34947484-34947798,34948246-34948374,
           34948774-34949169
          Length = 375

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +1

Query: 16  NAEFERQFLSGELEVELTPQGTLAERIRAGGAGIPAFFTPTGFGTLIQEGGSPIKYTKDG 195
           +A+   + + GE  V+L+PQG  AE        IPA F   G G    +GG   + T   
Sbjct: 281 HAKAVAESMLGEANVKLSPQGMGAEDFGFYAQRIPAAFFGIGVG---NDGGGMAETTTKN 337

Query: 196 KIDIP 210
           ++  P
Sbjct: 338 QLHSP 342


>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARIL-SASVPCGVNSTSNSPLKNCLSNSA 18
           PS   L   PPS  +   PV    A +PAP    L  ASVP  V     + +   +++  
Sbjct: 31  PSATVLPARPPSPPRASIPVSTSPAPLPAPAKPSLPGASVPIIVPQAPPASVSVPIASDG 90

Query: 17  FSP 9
           F P
Sbjct: 91  FGP 93


>09_04_0696 -
           19559227-19559622,19559710-19559862,19559957-19560784,
           19561727-19561842,19562286-19562319
          Length = 508

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
 Frame = -2

Query: 459 SVHIY*GYMNKIWINFINNFL--HFGYSYASSPAHSWIKVPGTFPEY*ITMFISFPSLNK 286
           S+HI+    + I ++F  + L  +    Y+S   H+  ++P  FP        S   +  
Sbjct: 270 SLHIFYQAYHPIQLSFGESSLVKNLSIGYSSVLNHACAELPYIFPNLETLTIRSLGEMVS 329

Query: 285 SKIASNCFFHYVIITIKLLYKTSRARNIYLSILGIFNW*PA 163
           + +  N F H   + I L   T      YLS++   +  P+
Sbjct: 330 TPMVPNTFLHLKYLCITLSAVTLSPSYDYLSLVSFLDACPS 370


>01_04_0098 -
           15989906-15989912,15990008-15990082,15990159-15990238,
           15990305-15990388,15998289-15998364,15999633-15999715,
           16000294-16000412,16001208-16001254,16001483-16001541
          Length = 209

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -3

Query: 356 GLKFLALFLNIRLPCLSAFQALTKAKSPVIASSI 255
           GL ++A+F +  +PC +  +A  KAK+P  ASS+
Sbjct: 114 GLHWIAVFFST-VPCKATTEAEGKAKAPQPASSV 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,594,535
Number of Sequences: 37544
Number of extensions: 421348
Number of successful extensions: 979
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)