Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0646
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32524| Best HMM Match : CoA_trans (HMM E-Value=1.26117e-44)         32   0.41 
SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)                  29   3.8  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9)                     28   8.8  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_32524| Best HMM Match : CoA_trans (HMM E-Value=1.26117e-44)
          Length = 318

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 334 KSARNFNPAMCRAARVTIAE 393
           KSARNFN  M +AA+VTIAE
Sbjct: 92  KSARNFNAPMGKAAKVTIAE 111


>SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)
          Length = 632

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = -3

Query: 242 PLNCCTKRAELGISIFPSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVN 63
           P++C +K   L I +  +  +    PPS   VP+    ++  +  P + +  +   C +N
Sbjct: 478 PMSCLSKNLTLNIYLTANATFSYR-PPSDDDVPDTANYQQGSVKHPKSEMFPSCHQCKLN 536

Query: 62  ST 57
           ST
Sbjct: 537 ST 538


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 61   ELTPQGTLAERIRAGGAG-IPAFFTPTGFGTLIQEGGSPIKYTKDGKIDIPSSARF 225
            E TP+  L +  +A G G  P    P G    +  G  PI+ T DG +  P+ +RF
Sbjct: 1781 EATPREHLPKAPQASGQGAFPIGAIPRG---AVPRGAVPIRSTGDGSLRQPALSRF 1833


>SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9)
          Length = 1217

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 445 IYVHRIIKEDNFEKRIERKTTRKPNQTS--KSTDSLREKIIRRA 570
           +Y+ ++ +ED  E+ I+ +  RKP   +  K+T + +E  +  A
Sbjct: 512 LYLSKVEREDRLEQGIQSENMRKPRSKAGDKATSNAKENALNAA 555


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 580 FKDGMHANLGIGMPMLASNYIPENVK 657
           F DG H  LG+G    ++ + PE VK
Sbjct: 446 FGDGRHGKLGLGDECFSNTFKPEKVK 471


>SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 39  FKWRIRGRIDTAGYTGRKNTCRRCRYSCLFYTYWIWYFNSGRRVTN*IYQG 191
           +KWR   +    GYT    + +RC      + +W+W       VT+ ++ G
Sbjct: 83  YKWRRYKKHSQEGYTNNHRSQKRCIGE---FAHWVWKIADISSVTDRLFGG 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,181,837
Number of Sequences: 59808
Number of extensions: 465107
Number of successful extensions: 1237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)