Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0646
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical pr...   287   7e-78
U88167-3|AAB42224.2|  363|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z93377-9|CAE17792.1|  350|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical
           protein C05C10.3 protein.
          Length = 521

 Score =  287 bits (703), Expect = 7e-78
 Identities = 144/242 (59%), Positives = 173/242 (71%), Gaps = 7/242 (2%)
 Frame = +1

Query: 1   SYVGENAEFERQFLSGELEVELTPQGTLAERIRAGGAGIPAFFTPTGFGTLIQEGGSPIK 180
           SYVGEN EF RQ+LSGELE+E TPQGTLAERIRA GAG+PAF+TPTG+GT IQEGG+PIK
Sbjct: 111 SYVGENGEFARQYLSGELELEFTPQGTLAERIRAAGAGVPAFYTPTGYGTQIQEGGAPIK 170

Query: 181 Y--TKDGKIDIPSSARFVQQFNGNNYVMEEAITGDFAFVKAWKADKHGNLIFRKSARNFN 354
           Y  T+ GKI++ S A+  +QFNG NYVMEEAI GDFA +KAW+AD  GN+ FR +A NFN
Sbjct: 171 YSKTEKGKIEVASKAKETRQFNGINYVMEEAIWGDFALIKAWRADTLGNIQFRHAAGNFN 230

Query: 355 PAMCRAARVTIAEV--XXXXXXXXXXFVHVPSIYVHRIIKEDNFEKRIERKTTRKPNQTS 528
             MC+A++ TI EV             VH+PSIY HR++   N++K IER          
Sbjct: 231 NPMCKASKCTIVEVEEIVEPGVIAPNDVHIPSIYCHRLVLGKNYKKPIERPMFAHEGPIK 290

Query: 529 KSTDSL---REKIIRRAALEFKDGMHANLGIGMPMLASNYIPENVKVLLQSENGILGLGP 699
            ST +    RE I  RAALEF DGM+ANLGIG+P LA NYIP    V LQSENGI+G+GP
Sbjct: 291 PSTSAAGKSREIIAARAALEFTDGMYANLGIGIPTLAPNYIPNGFTVHLQSENGIIGVGP 350

Query: 700 FP 705
           +P
Sbjct: 351 YP 352


>U88167-3|AAB42224.2|  363|Caenorhabditis elegans Hypothetical
           protein D2092.4 protein.
          Length = 363

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = -3

Query: 350 KFLALFL-NIRLPCLSAFQALTKAKS---PVIASSIT*LLPLNCCTKRAELGISIFPSLV 183
           K L +FL + ++PC +  +AL++ +     + A+    ++  N  +   ELGI++FPSLV
Sbjct: 94  KNLVIFLYDGKVPCPTCTEALSEVEEIDDDIEATGYVQVVKTNDRSVARELGINVFPSLV 153

Query: 182 Y 180
           Y
Sbjct: 154 Y 154


>Z93377-9|CAE17792.1|  350|Caenorhabditis elegans Hypothetical
           protein F13A7.13 protein.
          Length = 350

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 651 ILWNVITCQHRHSYTQICMHPIFKF*SSSSYDLFSQRISRF*CLI 517
           I ++++TC     Y  I M  + KF  +++Y L    IS F CL+
Sbjct: 35  IFFSMVTCSWLSFYMTIVMWKVKKFHGNATYILSCMYISWFECLL 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,852,686
Number of Sequences: 27780
Number of extensions: 375974
Number of successful extensions: 1137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)