Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0646
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21080.1 68415.m02502 expressed protein                             28   0.21 
At1g21540.1 68414.m02694 AMP-binding protein, putative strong si...    30   1.3  
At5g33406.1 68418.m03990 hAT dimerisation domain-containing prot...    29   2.3  
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b...    28   5.4  
At3g13820.1 68416.m01745 F-box family protein contains Pfam PF00...    28   7.2  
At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid...    27   9.5  
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica...    27   9.5  
At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5) co...    27   9.5  

>At2g21080.1 68415.m02502 expressed protein
          Length = 414

 Score = 28.3 bits (60), Expect(2) = 0.21
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 507 CSFSFYSLFKIIFLYDSVHIY*GYMNKI 424
           C F  YSL K++FL DS  +  GY  ++
Sbjct: 111 CFFRIYSLTKLLFLDDSTLVRLGYSREL 138



 Score = 23.4 bits (48), Expect(2) = 0.21
 Identities = 10/47 (21%), Positives = 21/47 (44%)
 Frame = -2

Query: 312 FISFPSLNKSKIASNCFFHYVIITIKLLYKTSRARNIYLSILGIFNW 172
           +I  PS     +  + FF+   ++   +  +  A N  +  L +F+W
Sbjct: 147 YILVPSFLVELVHKSIFFYSAEVSFPFIKSSCAALNFVMFFLVLFSW 193


>At1g21540.1 68414.m02694 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 9 AMPBP9 (AMPBP9) GI:20799726
          Length = 550

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 194 PSLVYLIGDPPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVN 63
           P ++ ++ + PS   + NPV V  AG P PPA I+S +   G N
Sbjct: 283 PMVLNMLTNYPSRKPLKNPVQVMTAGAP-PPAAIISRAETLGFN 325


>At5g33406.1 68418.m03990 hAT dimerisation domain-containing protein
           low similarity to transposase [Fusarium oxysporum f. sp.
           lycopersici] GI:3126916; contains Pfam profile PF05699:
           hAT family dimerisation domain
          Length = 485

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +1

Query: 7   VGENAEFERQFLSGELEVELTPQGTLAERIRAGGAGIPAFFTPTGFGTLIQEGGSPIKYT 186
           V E+ E E  FL  E E  L  +        AG   IP+   P GFG       SP   T
Sbjct: 387 VDEDEEMEDDFLGAEYEDTLLDKDDYEFDDSAGYNQIPSIPAPLGFGPPPSSTMSPYGTT 446

Query: 187 KDGK-IDIPSSA 219
            D   + +P++A
Sbjct: 447 MDAMYMHLPNAA 458


>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
           boundaries domain protein 13 (LBD13) identical to LOB
           DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
          Length = 268

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 167 PPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAFSPT 6
           PP   + P  +  + A  P PP  + S S+    +S+SNS   N + N   S T
Sbjct: 198 PPPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSATNSMYNPPPSST 251


>At3g13820.1 68416.m01745 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 415

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 589 GMHANLGIGMPMLASNYIPENVKVLLQSENG 681
           G  +++G G P++ S+Y+P  VKV ++   G
Sbjct: 361 GRASDVGNGQPLVFSSYVPSLVKVPVKQPKG 391


>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
           transport family protein weak similarity to SP|P25396
           Tellurite resistance protein tehA. {Escherichia coli};
           contains Pfam profile PF03595: C4-dicarboxylate
           transporter/malic acid transport protein
          Length = 635

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 124 RQEYLHLLHV-FFLPVYPAVSILPLILHLKIVFQIPHFLQHM 2
           R+EY H + + FF   + ++  L L +   I+  +PHFL ++
Sbjct: 325 RREYYHPIRINFFFAPFISLLFLALGVPPSIITDLPHFLWYL 366


>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
           to gi_3883126_gb_AAC77826
          Length = 135

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -3

Query: 167 PPS*IKVPNPVGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAF 15
           PPS    P+P  V  A  PAP    +S S   G +  S +P     SN AF
Sbjct: 72  PPS--VAPSPADVPTASPPAPEGPTVSPSSAPGPSDASPAP-SAAFSNKAF 119


>At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5)
           contains Pfam ACT domain PF01842
          Length = 456

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 217 ARFVQQFNGNNYVMEEAITGDFAFVKAWKADKHGNLI 327
           A+F+++ N    V++  +  D   +K   A+KHG L+
Sbjct: 16  AKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILL 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,810,221
Number of Sequences: 28952
Number of extensions: 341169
Number of successful extensions: 887
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)