Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0644
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 64 1e-10
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 63 1e-10
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 52 2e-07
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 44 6e-05
06_01_0080 + 644021-645463 30 1.1
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571 29 2.0
04_03_0515 + 16698589-16701066 29 2.6
03_01_0110 - 865605-866004,866094-866712,867659-867863 29 3.4
01_06_0663 - 30991390-30992340 29 3.4
06_01_1076 - 8778210-8778734 28 6.0
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 27 8.0
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 27 8.0
02_04_0573 + 23985468-23987054 27 8.0
01_06_0058 - 26056334-26056630,26057063-26057365,26057748-260578... 27 8.0
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 63.7 bits (148), Expect = 1e-10
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 2/162 (1%)
Frame = +2
Query: 86 IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDG-LLRGELK 262
+G++G+G +G A L A+ G V + D ++ A++ I L L G L + +
Sbjct: 13 VGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCE 72
Query: 263 AS-EQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXX 439
S EQ +C+ +L + A V E + E+ D+KKK+F LD + + I
Sbjct: 73 HSIEQIKCVSSVQEL----RDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSI 128
Query: 440 XXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEV 565
QVI H NPP + L+EI+ T EV
Sbjct: 129 SITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEV 170
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 63.3 bits (147), Expect = 1e-10
Identities = 43/164 (26%), Positives = 73/164 (44%)
Frame = +2
Query: 74 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG 253
K K+ I+G GL+G A Y V + +V K + I+ IK L + G +
Sbjct: 313 KVTKVAILGGGLMGSGIATAMILSNYPVILKEVNEKFLNAGIDRIKANLQSRVRKGKMTE 372
Query: 254 ELKASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXX 433
E + + + G D E K V E V EN+ LK+++F +L+ + +
Sbjct: 373 E-RYEKAMSLVTGVLDYER-FKDVDLVIEAVIENVKLKQQIFSDLEKYCPSHCVLATNTS 430
Query: 434 XXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEV 565
E + K +++ +H +P + +PL+EIV T P+V
Sbjct: 431 TIDLNLIGEKTRSKDRIVGAHFFSPAHVMPLLEIVRTQHTSPQV 474
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 52.4 bits (120), Expect = 2e-07
Identities = 40/163 (24%), Positives = 69/163 (42%)
Frame = +2
Query: 74 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG 253
K K+ ++G GL+G A V + +V + + + I L L G L
Sbjct: 308 KIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRGSLTK 367
Query: 254 ELKASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXX 433
+ K ++ +KG+ D K V E V E + LK+ +F +L+ V + I
Sbjct: 368 D-KMNKAMSLLKGALDYSD-FKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATNTS 425
Query: 434 XXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPE 562
E + ++I +H +P + +PL+EIV T P+
Sbjct: 426 TIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQ 468
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 44.4 bits (100), Expect = 6e-05
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 18/182 (9%)
Frame = +2
Query: 74 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG 253
K K+ IVG GL+G A Y V + +V K + I+ IK L + +G +
Sbjct: 309 KVSKVAIVGGGLMGSGIATALMLSNYPVVLKEVNDKFLDAGIDRIKANLQSRVRNGKMTK 368
Query: 254 ELKASEQFQCIKGSTDLETAVKGAIFVQE------------------CVPENLDLKKKVF 379
E+ + + G D E + ++E V EN+ +K++VF
Sbjct: 369 EIY-EKTLSLLTGVVDYERFKDVDLVIEESNTSNCYLAIYFIEQYWMAVVENVKVKQQVF 427
Query: 380 QNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKP 559
+L+ + + E + ++ +H +P + +PL+EIV + T P
Sbjct: 428 ADLERYCPSHCVLATNTSTIDLDLIGEKTNSQDRIAGAHFFSPAHVMPLLEIVRSNHTSP 487
Query: 560 EV 565
+V
Sbjct: 488 QV 489
>06_01_0080 + 644021-645463
Length = 480
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/45 (22%), Positives = 27/45 (60%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 217
+IG+ G ++G++ A+ A G+ ++VY+ ++ + ++ K +
Sbjct: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVE 49
>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
Length = 527
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +2
Query: 41 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQL 220
V+ST +A +K+ ++G+G IG ++ +G +VTV + + + +I+ Q
Sbjct: 222 VSSTGALALSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTVVEFASDIVPSMDGEIRKQF 281
Query: 221 HTLENDGLLRGELKASEQFQCIKGS---TDLETAVKGAIFVQEC 343
+ ++ LK GS +E A G V EC
Sbjct: 282 QRMLEKQKMKFMLKTKVVGVDTSGSGVKLTVEPAAGGEQSVLEC 325
>04_03_0515 + 16698589-16701066
Length = 825
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 434 YLLNLIISCYRQLRCRDSGTPFF 366
Y N++I+CYR+ R D G P F
Sbjct: 190 YTYNILINCYRRARRPDLGLPVF 212
>03_01_0110 - 865605-866004,866094-866712,867659-867863
Length = 407
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 497 PVNPPYYVPL---VEIVPAPWTKPE 562
PV PP Y+ L ++VP PW +PE
Sbjct: 317 PVKPPTYLRLNSKAQLVPNPWRQPE 341
>01_06_0663 - 30991390-30992340
Length = 316
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQ 184
++ VG+G++G+S A + GY +TVY+ A +
Sbjct: 21 RVAWVGTGVMGQSMAGHLLAAGYALTVYNRTASK 54
>06_01_1076 - 8778210-8778734
Length = 174
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 497 PVNPPYYVPL---VEIVPAPWTKPE 562
PV PP Y+ L ++VP PW +PE
Sbjct: 115 PVKPPTYLRLNSKPQLVPNPWRQPE 139
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 7 LQEFGTRVVRYGRIYSNH 60
LQ G V+RYGR Y NH
Sbjct: 858 LQNTGNFVLRYGRTYKNH 875
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQ-VTVYD 169
+IGIVG+G G S A A +GY+ VT+++
Sbjct: 23 RIGIVGAGPSGLSAAYALAKLGYRNVTLFE 52
>02_04_0573 + 23985468-23987054
Length = 528
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 459 SENNDGKVVLVELDNIVLSSTTLSRFWNTFFLRS-RFSGTHS*TNIAPLTAVSR 301
S + G+V + L + LS T S N FL++ FS H + PL + R
Sbjct: 68 SRRHPGRVTALNLFKLSLSGTISSSLGNLTFLKALNFSSNHFSGKLPPLNHLHR 121
>01_06_0058 -
26056334-26056630,26057063-26057365,26057748-26057891,
26057947-26058702,26058844-26059088,26059177-26060079,
26060163-26060225,26060537-26061025,26061211-26061291,
26061801-26061956,26062371-26062416
Length = 1160
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 500 PDEKQ*PETYVSILQRIMMAK*YLLNLIISCYRQLRCRDS 381
PD+K+ PE Y +++ +M LN C R +CR++
Sbjct: 749 PDKKKYPELYNMVVKHMMHGPCGRLNGRCQCMRDGKCRNN 788
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,775,128
Number of Sequences: 37544
Number of extensions: 324178
Number of successful extensions: 951
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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