Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0644
(571 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12) 85 3e-17
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04) 32 0.29
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06) 31 0.50
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_29581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 29 2.7
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7) 28 4.7
SB_57235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38) 27 8.2
SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094) 27 8.2
SB_4519| Best HMM Match : ZU5 (HMM E-Value=0.28) 27 8.2
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0) 27 8.2
>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
Length = 120
Score = 85.4 bits (202), Expect = 3e-17
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = +2
Query: 338 ECVPENLDLKKKVFQNLDSVVDDN-TIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPY 514
EC PENL+LKKKVFQNL++ + + I E L+ + + IV+HP+NPPY
Sbjct: 1 ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60
Query: 515 YVPLVEIVPAPWTKPEV 565
YVPLVE++PAPWT V
Sbjct: 61 YVPLVEVIPAPWTDASV 77
>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 812
Score = 51.6 bits (118), Expect = 4e-07
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 1/160 (0%)
Frame = +2
Query: 86 IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGELKA 265
+ ++G+GL+G A A G +V +YD A+ A+E K L + + L R E+ A
Sbjct: 8 VAVIGAGLMGTCIAGELAYHGARVNLYDRSAQ----AMEKSKEML-IQQKEQLKREEVMA 62
Query: 266 SEQF-QCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXX 442
+ F + LE AV + + E ENL++KK VF+++ N +
Sbjct: 63 TSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTNAVIATNTLALD 122
Query: 443 XXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPE 562
E + + + + + P Y +P VEI T PE
Sbjct: 123 TSVVAEHVTNPERCLGIRFLYPVYSIPEVEITLGSQTSPE 162
>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
Length = 485
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 169
++ IVG GL+G A+ FA GY+V +Y+
Sbjct: 165 EVAIVGGGLVGALSAVFFAKRGYKVDLYE 193
>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
Length = 456
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 59 MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTV 163
++S F +++ ++G+G+IG + A + GY+VTV
Sbjct: 13 LSSPFGGQRVLVIGAGVIGLTTAYELLTAGYEVTV 47
>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 169
K+GIVGSG+ G S A L G +V +Y+
Sbjct: 2 KVGIVGSGIAGLSAAWLLTLRGNEVHLYE 30
>SB_29581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = -1
Query: 337 LNKYSSFNCGFQIRRPFYTLKLFASFELAS*QTIVFKGMQLVFDVLNGIGNLFCDYIIYS 158
+++Y C +I P KL A+ E A I+ KG VFD L GN+ IY
Sbjct: 22 MSQYGRLFCSTRIPHPGKD-KL-ATHEGARHMLIMHKGKFFVFDTLTTDGNIVSTSTIYE 79
Query: 157 NL 152
NL
Sbjct: 80 NL 81
>SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 765
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 185 ITDAIEDIKYQLHTLENDGLLRGELKASEQFQCIKGSTDLETAVKGAIFVQECVPENLD- 361
+ AIE + EN L+ GE+ S+ + T L VK I V E+L
Sbjct: 105 LAQAIERCRMNEMRKENRDLVLGEINKSDSMRICVDLTQLNEGVKWEIQPMPSVDESLSK 164
Query: 362 -LKKKVFQNLDS 394
+ KVF LD+
Sbjct: 165 LSQGKVFSKLDA 176
>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 589
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 110 IGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 217
+GR W + ++ +QV D V KQ A++D Y+
Sbjct: 1 MGRLWILAIPAIIWQVCTTDAVRKQQLRAVDDETYK 36
>SB_57235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 305 ETAVKGAIFVQECVPENLDLKKKVFQNLDS 394
++A +G V++C+ N D+K K + LDS
Sbjct: 20 QSATRGLALVKDCLMANTDVKGKGIKRLDS 49
>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
Length = 451
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 98 GSGLIGRSWAMLFASVGYQVTVYD 169
G+G +G S + GY+VTVYD
Sbjct: 148 GAGYLGSSLVPILLDQGYKVTVYD 171
>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
Length = 332
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 101 SGLIGRSWAMLFASVGYQVTVYDVVAK--QITDAIEDIKYQ 217
S L+G+SW L S G Q+ D + K Q+ I+ I YQ
Sbjct: 173 SRLLGQSWNQLALSTGTQLMESDAMIKFGQLCWEIQSIMYQ 213
>SB_4519| Best HMM Match : ZU5 (HMM E-Value=0.28)
Length = 403
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 251 GELKASEQFQCIKGSTDLETAVKGAIFVQECV 346
G LK S + QC++ S + +V G +FV V
Sbjct: 125 GALKQSVEIQCVRHSPTVFPSVDGEVFVSHIV 156
>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1250
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 141 EANNIAHDLPIKPLPTIPIFSDLNLDAMITVDATVPHDP 25
E + AH LP K IP F+ +D + VP++P
Sbjct: 1163 EKHKTAHSLPSKHSDDIPTFTARKVDIPLDSPEPVPNEP 1201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,460,442
Number of Sequences: 59808
Number of extensions: 376619
Number of successful extensions: 907
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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