Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0644
(571 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase, put... 66 2e-11
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 64 5e-11
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat... 60 1e-09
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi... 33 0.13
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu... 31 0.54
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 31 0.54
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 31 0.54
At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carot... 31 0.72
At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carot... 31 0.72
At1g55980.1 68414.m06421 expressed protein 29 1.7
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 29 2.2
At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family... 29 2.9
At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family... 29 2.9
At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family... 29 2.9
At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD) id... 28 3.8
At5g45150.1 68418.m05543 ribonuclease III family protein similar... 28 5.0
At2g39240.1 68415.m04819 RNA polymerase I specific transcription... 28 5.0
At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-bi... 28 5.0
At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase NAD-bi... 28 5.0
At5g64550.1 68418.m08112 loricrin-related contains weak similari... 27 6.7
At3g54660.1 68416.m06048 gluthatione reductase, chloroplast near... 27 6.7
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,... 27 8.8
At4g20930.1 68417.m03033 3-hydroxyisobutyrate dehydrogenase, put... 27 8.8
At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containi... 27 8.8
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 27 8.8
At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2, mitoc... 27 8.8
At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2, mitoc... 27 8.8
At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenas... 27 8.8
At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1, mitoc... 27 8.8
At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1, mitoc... 27 8.8
>At3g15290.1 68416.m01931 3-hydroxybutyryl-CoA dehydrogenase,
putative similar to S(+)-beta-hydroxybutyryl CoA
dehydrogenase (3-hydroxybutyryl-CoA dehydrogenase)
[Paracoccus denitrificans] GI:12003356; contains Pfam
profiles PF02737: 3-hydroxyacyl-CoA dehydrogenase NAD
binding, PF00725: 3-hydroxyacyl-CoA dehydrogenase
C-terminal
Length = 294
Score = 65.7 bits (153), Expect = 2e-11
Identities = 44/161 (27%), Positives = 75/161 (46%)
Frame = +2
Query: 80 EKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGEL 259
+ +G+VG+G +G A L A+ G V + D ++ A I + + GL+ E+
Sbjct: 5 KSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISKEV 64
Query: 260 KASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXX 439
+ ++ +++LE I V E + E+ D+KKK+F++LD + + I
Sbjct: 65 -GDDAMHRLRLTSNLEDLCSADIIV-EAIVESEDIKKKLFKDLDGIAKSSAILASNTSSI 122
Query: 440 XXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPE 562
+ SQVI H +NPP + LVEI+ T E
Sbjct: 123 SITRLASATRRPSQVIGMHFMNPPPIMKLVEIIRGADTSEE 163
>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
identical to fatty acid multifunctional protein (AtMFP2)
GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
acid beta-oxidation); contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 725
Score = 64.5 bits (150), Expect = 5e-11
Identities = 44/164 (26%), Positives = 75/164 (45%)
Frame = +2
Query: 74 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG 253
K +K+ I+G GL+G A Y V + +V K + I +K L + G +
Sbjct: 311 KIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQ 370
Query: 254 ELKASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXX 433
E K + +KGS D E+ + V E V EN+ LK+++F +L+ + I
Sbjct: 371 E-KFEKTMSLLKGSLDYES-FRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428
Query: 434 XXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEV 565
E K + +++ +H +P + +PL+EIV T +V
Sbjct: 429 TIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQV 472
>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
acid multifunctional protein (AIM1) identical to
gi:4337025; contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 721
Score = 59.7 bits (138), Expect = 1e-09
Identities = 38/162 (23%), Positives = 75/162 (46%)
Frame = +2
Query: 80 EKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGEL 259
+K+ ++G GL+G A +V + ++ ++ + I+ ++ + +L + G L +
Sbjct: 310 KKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLTQD- 368
Query: 260 KASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXX 439
KA + KG D T V E V EN+ LK+ +F+ ++ V + I
Sbjct: 369 KAGKALSLFKGVLDY-TEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTSTI 427
Query: 440 XXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEV 565
E K +++ +H +P + +PL+EIV + T +V
Sbjct: 428 DLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQV 469
>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 334
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 38 TVASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 169
T++S +I S + KIG +G+G++GRS GY VTV++
Sbjct: 27 TISSDIITPS---NTKIGWIGTGVMGRSMCGHLIKAGYTVTVFN 67
>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
putative similar to cytosine-5 methyltransferase (METII)
[Arabidopsis thaliana] GI:6523846; contains Pfam
profiles PF01426: BAH domain, PF00145: C-5
cytosine-specific DNA methylase
Length = 1404
Score = 31.1 bits (67), Expect = 0.54
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +2
Query: 107 LIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRG-ELKASEQFQC 283
LI R W ++ + + ++ A++ + +ED++ + E D + + E++ ++ +
Sbjct: 520 LINRIWGEFYSIYSPEDPLEEIGAEEEFEEVEDVEEEDENEEEDTIQKAIEVQKADTLKK 579
Query: 284 IKGS-TDLETAVKGAIFVQECVPENL 358
I+GS ++E +G I + C E L
Sbjct: 580 IRGSCKEMEIRWEGEILGETCAGEPL 605
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 31.1 bits (67), Expect = 0.54
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 211
+IG+ G ++G++ A+ A G+ ++VY+ ++ + +E K
Sbjct: 7 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 49
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 31.1 bits (67), Expect = 0.54
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 211
+IG+ G ++G++ A+ A G+ ++VY+ ++ + +E K
Sbjct: 7 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 49
>At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carotene
7,8-desaturase identical to SP|Q38893 Zeta-carotene
desaturase, chloroplast precursor (EC 1.14.99.30)
(Carotene 7,8-desaturase) {Arabidopsis thaliana}
Length = 558
Score = 30.7 bits (66), Expect = 0.72
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 169
K+ I+G+GL G S A+ G++V +YD
Sbjct: 58 KVAIIGAGLAGMSTAVELLDQGHEVDIYD 86
>At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carotene
7,8-desaturase identical to SP|Q38893 Zeta-carotene
desaturase, chloroplast precursor (EC 1.14.99.30)
(Carotene 7,8-desaturase) {Arabidopsis thaliana}
Length = 558
Score = 30.7 bits (66), Expect = 0.72
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 169
K+ I+G+GL G S A+ G++V +YD
Sbjct: 58 KVAIIGAGLAGMSTAVELLDQGHEVDIYD 86
>At1g55980.1 68414.m06421 expressed protein
Length = 464
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = +2
Query: 20 ARGSCGTVASTVI-------MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 169
A+ C +A+T I M+S + K+ ++GSG+ G A A G VT++D
Sbjct: 132 AQKECKPMAATTISPAIRKQMSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 188
>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
profile PF01593: amine oxidase, flavin-containing
Length = 384
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 59 MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 169
M+S + K+ ++GSG+ G A A G VT++D
Sbjct: 14 MSSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFD 50
>At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/40 (22%), Positives = 25/40 (62%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 202
+IG+ G ++G++ A+ A G+ ++VY+ ++ + ++
Sbjct: 8 RIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLD 47
>At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/40 (22%), Positives = 25/40 (62%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 202
+IG+ G ++G++ A+ A G+ ++VY+ ++ + ++
Sbjct: 8 RIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLD 47
>At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/40 (22%), Positives = 25/40 (62%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIE 202
+IG+ G ++G++ A+ A G+ ++VY+ ++ + ++
Sbjct: 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLD 47
>At3g19450.1 68416.m02466 cinnamyl-alcohol dehydrogenase (CAD)
identical to SP|P48523 Cinnamyl-alcohol dehydrogenase
(EC 1.1.1.195) (CAD) [Arabidopsis thaliana]
Length = 365
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 56 IMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLEN 235
+MAS K GI+G G +G + ++G+ VTV K+ +AIE + + + +
Sbjct: 178 LMASGLKG---GILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKEEAIEHLGADDYVVSS 234
Query: 236 D 238
D
Sbjct: 235 D 235
>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles PF00035:
Double-stranded RNA binding motif, PF00636 RNase3 domain
Length = 957
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +2
Query: 206 IKYQLHTLENDGLLRGELKASEQFQCIKGSTD-----LETAVKGAIFVQECVPENLDLKK 370
+K ++ +E ++G+ K +++ + S D LE++V + + ENLD KK
Sbjct: 874 VKIEIPNIEGTFHIKGDAKPTKK-EAENSSADHMIRALESSVMSLVITNLQMHENLDGKK 932
Query: 371 KVFQNLDSVVDDNTI 415
K Q +S+ ++ T+
Sbjct: 933 KNLQMKESLNENKTL 947
>At2g39240.1 68415.m04819 RNA polymerase I specific transcription
initiation factor RRN3 family protein contains Pfam
profile PF05327: RNA polymerase I specific transcription
initiation factor RRN3
Length = 545
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 103 TSNDPDLFRLEFRCHDYCR-CDRTARP 26
+SN+ + RL C DYCR C+ ARP
Sbjct: 337 SSNNNQVTRLVDECADYCRTCNDDARP 363
>At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 318
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVY 166
+IG +G G++G + + GY VTVY
Sbjct: 36 RIGWIGIGIMGSAMVSHIIAAGYSVTVY 63
>At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein contains Pfam
profile: PF03446 NAD binding domain of
6-phosphogluconate
Length = 299
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 83 KIGIVGSGLIGRSWAMLFASVGYQVTVY 166
+IG +G G++G + + GY VTVY
Sbjct: 15 RIGWIGIGIMGSAMVSHILAAGYSVTVY 42
>At5g64550.1 68418.m08112 loricrin-related contains weak similarity
to Loricrin (Swiss-Prot:P23490) [Homo sapiens]
Length = 634
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 8 CRNSARGSCGTVASTVIMASKFKSEKIGIVGSGL 109
C ARG G A+ M+ K+G++G GL
Sbjct: 478 CEKFARGKSGLCAAHNSMSQDKAGSKVGLIGPGL 511
>At3g54660.1 68416.m06048 gluthatione reductase, chloroplast nearly
identical to SP|P42770 Glutathione reductase,
chloroplast precursor (EC 1.8.1.7) (GR) (GRASE)
{Arabidopsis thaliana}; identical to cDNA glutathione
reductase GI:451197
Length = 565
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 74 KSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIK 211
K +KI IVG G I +A +F + +V V+ K + ED++
Sbjct: 259 KPKKIAIVGGGYIALEFAGIFNGLNCEVHVFIRQKKVLRGFDEDVR 304
>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
putative similar to SP|Q03460 Glutamate synthase [NADH],
chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
{Medicago sativa}
Length = 2208
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 68 KFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 169
K +K+ I+GSG G + A +G+ VTVY+
Sbjct: 1842 KRTGKKVAIIGSGPAGLAAADQLNKMGHLVTVYE 1875
>At4g20930.1 68417.m03033 3-hydroxyisobutyrate dehydrogenase,
putative similar to SP|P29266 3-hydroxyisobutyrate
dehydrogenase, mitochondrial precursor (EC 1.1.1.31)
{Rattus norvegicus}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 347
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 14 NSARGSCGTVASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDV 172
N GS +S+ +++F++ +G +G G +G GY+VTV+D+
Sbjct: 18 NFVSGSLHRFSSSSQNSNQFQN--VGFIGLGNMGFRMVNNLIRAGYKVTVHDI 68
>At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 722
Score = 27.1 bits (57), Expect = 8.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -1
Query: 403 VNYAVEILEHLFFKVKILWNTFLNKYSSF 317
+NYA + + + + + WNT + +Y F
Sbjct: 162 INYARNVFDEMSHRDVVTWNTMIERYCRF 190
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to beta-transducin
repeats containing protein - Homo sapiens,PID:e1284220;
3' EST no_NP:TC8031
Length = 1446
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 2 PGCRNSARGSCGTVASTVIMASKFKSEKIGIVG---SGLIGRSWAM 130
PG N RG+ + +T I A F + G+V +GL+ R W++
Sbjct: 1302 PGLPNFLRGASESAVTTAISALSFSPDGEGLVAFSENGLMIRWWSL 1347
>At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2,
mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
nearly identical to GB:AAF34796 [gi:6984216] from
[Arabidopsis thaliana]; alternative splice form exists
Length = 507
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 41 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 217
V+ST ++ +K+ ++G+G IG ++ +G +VTV + A + +I+ Q
Sbjct: 202 VSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQ 260
>At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2,
mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
nearly identical to GB:AAF34796 [gi:6984216] from
[Arabidopsis thaliana]; alternative splice form exists
Length = 507
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 41 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 217
V+ST ++ +K+ ++G+G IG ++ +G +VTV + A + +I+ Q
Sbjct: 202 VSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQ 260
>At1g79530.1 68414.m09271 glyceraldehyde 3-phosphate dehydrogenase,
cytosolic, putative / NAD-dependent
glyceraldehyde-3-phosphate dehydrogenase, putative
similar to glyceraldehyde-3-phosphate dehydrogenase
[Pinus sylvestris] GI:1100223; contains Pfam profiles
PF02800: Glyceraldehyde 3-phosphate dehydrogenase
C-terminal domain, PF00044: Glyceraldehyde 3-phosphate
dehydrogenase NAD binding domain
Length = 422
Score = 27.1 bits (57), Expect = 8.8
Identities = 25/76 (32%), Positives = 32/76 (42%)
Frame = +2
Query: 41 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQL 220
V S V +S K+GI G G IGR L + +VVA + D D KY
Sbjct: 74 VPSAVRRSSSSGKTKVGINGFGRIGR----LVLRIATSRDDIEVVA--VNDPFIDAKYMA 127
Query: 221 HTLENDGLLRGELKAS 268
+ L+ D G K S
Sbjct: 128 YMLKYDS-THGNFKGS 142
>At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1,
mitochondrial / lipoamide dehydrogenase 1 (MTLPD1)
identical to GB:AAF34795 [gi:12704696] from [Arabidopsis
thaliana]
Length = 507
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +2
Query: 41 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 217
V+ST ++ +K+ ++G+G IG ++ +G +VTV + + +I+ Q
Sbjct: 202 VSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQ 260
>At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1,
mitochondrial / lipoamide dehydrogenase 1 (MTLPD1)
identical to GB:AAF34795 [gi:12704696] from [Arabidopsis
thaliana]
Length = 507
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +2
Query: 41 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 217
V+ST ++ +K+ ++G+G IG ++ +G +VTV + + +I+ Q
Sbjct: 202 VSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQ 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,271
Number of Sequences: 28952
Number of extensions: 270001
Number of successful extensions: 810
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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