Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0641
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.68 
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    24   0.90 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   1.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   1.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 395  RPLRSWSSYRAATAWSTARGPRPGTSAAARTTPAHRSTTS 276
            +P   WSS   +  W+T    R  T+    T+   R TT+
Sbjct: 1038 KPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTT 1077


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 224 WCQQKTFGYNNIDITNFSSS 283
           WC+Q T  Y+NI++    +S
Sbjct: 15  WCEQYTTKYDNINVDEILAS 34


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 496 ILNFRLKEFLFLLIKTQR 549
           I+ FRL  FL LL+KT R
Sbjct: 650 IVGFRLVAFLALLVKTWR 667


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 496 ILNFRLKEFLFLLIKTQR 549
           I+ FRL  FL LL+KT R
Sbjct: 650 IVGFRLVAFLALLVKTWR 667


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,959
Number of Sequences: 336
Number of extensions: 2857
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)