Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0641
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    65   9e-12
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.9  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   6.7  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.7  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   6.7  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   8.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.9  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 64.9 bits (151), Expect = 9e-12
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
 Frame = +2

Query: 188 KNGGSKRNSLLKWCQQKTFGYN-NIDITNFSSSWNDGLALCALLHSYLGEGRVPYSTLSP 364
           + G + +  LL WCQ+KT  Y+  +D+ +F+ SW +GLA CAL+H +  +  + Y+ L  
Sbjct: 120 EEGLTAKEGLLLWCQRKTANYHPEVDVQDFTRSWTNGLAFCALIHQHRPD-LLDYNKLDK 178

Query: 365 HDKRTNFSVAF-AAAESVGIP 424
            + R N  +AF  A +S+GIP
Sbjct: 179 KNHRANMQLAFDIAQKSIGIP 199


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 434  PAWSGCPRTPQLRRPLRSWSSYRAATAWSTARGPRPGTSAAARTTPAHRSTTS 276
            PA    P T Q   P+ S ++        +A  P P T  +A ++P++ S  S
Sbjct: 1029 PAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPS 1081


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -3

Query: 356 AWSTA-RGPRPGTSAA-ARTTPAHRSTTS 276
           A STA +GPRP TSA+   T+PA+ + T+
Sbjct: 223 ASSTATKGPRPTTSASNTNTSPANGAPTN 251


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 617 LSLVLTELNSKHSFI*DWQLVIFL*VLMRRKRNSFNLKFK 498
           L L+  +LN KHS      L+I L  ++    +S++L+F+
Sbjct: 499 LFLLENQLNCKHSLFQRKSLIILLNGILNCPHSSYDLQFR 538


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 410 TPQLRRPLRSWSSYRAATAWSTARGPRPGTSAAARTTP 297
           TP  +RP R  SS+    A +T +   P T  +  +TP
Sbjct: 110 TPAAKRPRRQPSSFLDVHASNTRKRGSPDTPDSGHSTP 147


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -2

Query: 426 VGMPTDSAAAKATEKLVLLSCGDSVEYGTRPSPRYECSSAHNASPSFHDELKFVISILLY 247
           V   T  A A+   KLV L CG       + +  Y+ +  H  S S     +F + +LL 
Sbjct: 56  VDADTLKALAENGVKLVALRCGGYNNVNLKAASEYKITVVHVPSYSPFAVSEFTVGLLLS 115

Query: 246 PN 241
            N
Sbjct: 116 LN 117


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -3

Query: 428 WSGCPRTPQLRRPLRSWSSYRAATAWSTARGPRPGTSAAARTTPAHRSTTS 276
           W+  P   QL  P+R     RAA + +  R P PG S+A    PA  S TS
Sbjct: 862 WNDAPMLGQL--PMR-----RAAPSMAPVRSPFPGASSA---QPAAMSRTS 902


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 157 KERSIERFTSEEWRFETQFPTEVVSTED 240
           KER IER T E+W  +   P  ++S ED
Sbjct: 336 KER-IERRTLEKWTNKAVIPIVILSDED 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,775
Number of Sequences: 5004
Number of extensions: 47103
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)