Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0641
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0716 + 5348720-5349115                                           33   0.14 
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346...    33   0.18 
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    30   1.3  
09_02_0468 - 9608922-9610061                                           30   1.7  
01_01_0139 + 1263356-1264273                                           29   2.3  
08_02_1285 - 25881091-25881798                                         29   4.0  
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146...    28   5.2  
04_03_0661 - 18468244-18469580,18469610-18469619                       27   9.2  
03_04_0181 - 18192774-18192970,18193519-18193882                       27   9.2  
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353...    27   9.2  
02_02_0402 - 9852407-9853519                                           27   9.2  
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043...    27   9.2  

>02_01_0716 + 5348720-5349115
          Length = 131

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 434 PAWSG--CPRTPQLRRPLRSWSSYRAATAWSTARGPRPGTSAAARTTPAHRSTTS 276
           PAW G   P   ++R+P RS ++  A+  W++     P  S AA + P +  +TS
Sbjct: 23  PAWVGKAAPNLRRVRQPPRSKTATAASLTWTSMVPTPPPLSGAASSGPTYAPSTS 77


>07_03_1523 +
           27432991-27433199,27433585-27434185,27434468-27434642,
           27434686-27436418,27436871-27437317
          Length = 1054

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = -3

Query: 398 RRPLRSWSSYRAATAWSTARGPRPGTSAAARTTPAHRSTTS*NS*YRYCCIRTSSVDTTS 219
           RRP+ + S   AA+  ST  GP     A AR    +    S ++     C R  + D T 
Sbjct: 97  RRPITASSLCTAASPMSTDTGPATPNLADARGLQRYHRQASQSAAVATTCSRCVAADATG 156

Query: 218 VGNCVSNRH 192
            G+  ++RH
Sbjct: 157 CGSLGASRH 165


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 375  GPTSQWPSQLRS-PWASRPRWYVHG 446
            GPT+Q P + RS PW    R+Y+HG
Sbjct: 1246 GPTNQPPKKERSLPWWDDMRYYIHG 1270


>09_02_0468 - 9608922-9610061
          Length = 379

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 407 PQLRRPLRSWSSYRAATAWSTARGPRPGTSAAARTTP 297
           P   +P R W  YR+  A S+ + PRP +  A    P
Sbjct: 2   PSQPQPFRFWLPYRSNVASSSRQQPRPSSGTAPAPPP 38


>01_01_0139 + 1263356-1264273
          Length = 305

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 416 PRTPQLRRPLRSWSSYRAATAWSTARGPRPGTSAAARTTPAH 291
           P  P  RRP  S  + R A   ++   P   TSA ART  AH
Sbjct: 105 PWRPSSRRPRSSAPTRRTAAGATSPTTPSTTTSARARTRRAH 146


>08_02_1285 - 25881091-25881798
          Length = 235

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 443 VYVPAWS--GCPRTPQLRRPLRSWSSYRAATAW 351
           VY P  S  G     QLRR LR W+S RA   W
Sbjct: 80  VYEPVESVGGVGLLGQLRRRLRPWASLRAGAEW 112


>02_01_0224 -
           1461924-1462227,1462602-1462798,1463059-1463213,
           1464101-1464207,1464289-1464375,1465332-1465414,
           1465959-1466027,1466332-1466658,1466744-1466957,
           1467170-1467267,1467516-1467554,1467672-1468160
          Length = 722

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 432 SVVGMPTDSAAAKATEKLVLLSCGDSVEYGTRPSPRYE-CSSAHNASPSFHDELKFVISI 256
           +V GMPT+S   ++    +L+SC + +    + +   + C ++  AS S  + +  V  I
Sbjct: 327 AVWGMPTNSLMGRSLISKILVSCSEEILTLVQSTGSLDKCEASSEASSSVRNAISQVYDI 386

Query: 255 LL 250
           ++
Sbjct: 387 II 388


>04_03_0661 - 18468244-18469580,18469610-18469619
          Length = 448

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 441 VRTSVVGMPTDSAAAKATEK 382
           VRT  VG+PT+ AA  A+ K
Sbjct: 336 VRTETVGLPTEKAAGNASSK 355


>03_04_0181 - 18192774-18192970,18193519-18193882
          Length = 186

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 461 NKSECTVYVPAWSGCPRTPQLRRPLRSWSSYRA 363
           +K   T     W  CP   +L  PL +W+ +RA
Sbjct: 129 SKVRGTCVADMWLPCPSNLKLEEPLPAWNVFRA 161


>02_05_0568 -
           30034280-30034393,30034888-30035163,30035246-30035371,
           30035595-30035753,30035893-30036063,30036374-30036493,
           30036565-30036924,30038800-30039686,30039790-30040363,
           30041379-30041507,30042423-30042494,30042572-30042728,
           30042974-30043023,30043569-30044327
          Length = 1317

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 VPYSTLSPHDKRTNFSVAFAAA 406
           VP S L PHD +  +SVAF  A
Sbjct: 356 VPLSILKPHDGQAVYSVAFLTA 377


>02_02_0402 - 9852407-9853519
          Length = 370

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = +1

Query: 220 EVVSTEDVRIQQYRYHEFQLVVERW--AGVVRAAALVP--GRGPRAVLHAVAAR*EDQLL 387
           EV++T+  R+ + R     L+ +     GV    A VP   +G RA L AVAA  ED+LL
Sbjct: 212 EVLATQK-RVDEMRKKYAGLIAKSQDVIGVAHREAAVPEKAKGRRANLAAVAAAAEDELL 270

Query: 388 SGLRSC 405
              + C
Sbjct: 271 LLRQRC 276


>01_05_0627 +
           23802235-23802853,23803357-23803430,23804207-23804364,
           23804640-23804964
          Length = 391

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 392 PLRSWSSYRAATAWSTARGPRPGTSAAAR 306
           P  SWSS+ A      A  PRP TS   R
Sbjct: 100 PRLSWSSWEADELEEAATAPRPSTSRRRR 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,103,862
Number of Sequences: 37544
Number of extensions: 319231
Number of successful extensions: 1093
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)