Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0641
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40161| Best HMM Match : CH (HMM E-Value=4.3e-30) 73 2e-13
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_9999| Best HMM Match : CH (HMM E-Value=5.7e-16) 64 1e-10
SB_39164| Best HMM Match : RNB (HMM E-Value=0) 53 2e-07
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26) 52 4e-07
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_45259| Best HMM Match : CH (HMM E-Value=0.00071) 40 0.002
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058) 39 0.003
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.082
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 34 0.11
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 29 3.1
SB_40597| Best HMM Match : Dynein_heavy (HMM E-Value=0.55) 29 4.1
SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7) 29 4.1
SB_20018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_19921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53) 29 4.1
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_58067| Best HMM Match : TPR_2 (HMM E-Value=0) 28 7.1
SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4) 27 9.4
>SB_40161| Best HMM Match : CH (HMM E-Value=4.3e-30)
Length = 144
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +2
Query: 215 LLKWCQQKTFGYNNIDITNFSSSWNDGLALCALLHSYLGEGRVPYSTLSPHDKRTNFSVA 394
LLKWCQ++T Y ++DI + SSSW DGLA CA++H + + + + +L P D TN +A
Sbjct: 6 LLKWCQKQTKSYKHVDINDMSSSWKDGLAFCAIIHRFRPD-LLNFDSLKPGDTETNCKLA 64
Query: 395 F-AAAESVGIP 424
F A E +GIP
Sbjct: 65 FETAEEQLGIP 75
>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = +2
Query: 182 QVKNGGSKRNSLLKWCQQKTFGYNNIDITNFSSSWNDGLALCALLHSYLGEGRVPYSTLS 361
Q+K S + +L WC+ T GY ++ITNFS S+ +GLA CAL+H + + + +L
Sbjct: 443 QLKRQMSVSSLILTWCKDVTEGYKGVNITNFSGSFANGLAFCALIHKF-NPDKFDFDSLD 501
Query: 362 PHDKRTNFSVAFAAAE 409
P ++ NF +AF E
Sbjct: 502 PENRHYNFKLAFETGE 517
>SB_9999| Best HMM Match : CH (HMM E-Value=5.7e-16)
Length = 158
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +2
Query: 257 IDITNFSSSWNDGLALCALLHSYLGEGRVPYSTLSPHDKRTNFSVAFAAAESVGIPTTLV 436
++I NF++SW DGLA+CAL H++ E +PY TL P D+ N+++AF AA + GI L
Sbjct: 59 VEIQNFTTSWADGLAMCALFHNFSPE-LIPYETLDPKDRTRNWTLAFEAAYAEGIDPLLE 117
Query: 437 RTRCIRI 457
+R+
Sbjct: 118 LEDVLRV 124
>SB_39164| Best HMM Match : RNB (HMM E-Value=0)
Length = 597
Score = 53.2 bits (122), Expect = 2e-07
Identities = 16/38 (42%), Positives = 31/38 (81%)
Frame = +2
Query: 212 SLLKWCQQKTFGYNNIDITNFSSSWNDGLALCALLHSY 325
+L++WC+Q+T GY ++++ + + SW DG+ALCA++H +
Sbjct: 539 ALVEWCRQQTSGYRDVNVRDLTHSWRDGMALCAIIHRF 576
>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
Length = 589
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +2
Query: 215 LLKWCQQKTFGYNNIDITNFSSSWNDGLALCALLHSYLGEGRVPYSTLSPHDKRTNFSVA 394
LL+WC+++ GY+ ++I +FSSSW +GLA A+LHSY E Y+ + A
Sbjct: 241 LLEWCRERLDGYD-VEINDFSSSWQNGLAFSAILHSYNPEA-FDYTEVKQMGTTERLEHA 298
Query: 395 FAAAE 409
F+ AE
Sbjct: 299 FSXAE 303
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +2
Query: 215 LLKWCQQKTFGYNNIDITNFSSSWNDGLALCALLHSY 325
LLKWC+ Y + I NF+ S++DG ALC LLH Y
Sbjct: 1208 LLKWCRLVCKSYG-LKIDNFTVSFSDGRALCYLLHHY 1243
>SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)
Length = 1032
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 257 IDITNFSSSWNDGLALCALLHSYLGEGRVPYSTLSPHDKRTNFSVAFAAAESV-GIPTTL 433
+ I +FS SW DGLA A+LHSY G + + D T AF+ A V +P L
Sbjct: 17 VTIRDFSKSWRDGLAFNAILHSYRG-SLFDFGKIIQQDTFTRLDNAFSTANLVWSVPKLL 75
>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
Length = 1187
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 215 LLKWCQQKTFGYNNI-DITNFSSSWNDGLALCALLHSY 325
LL WC++ GY ++ + +F+ SW DGLA A++H++
Sbjct: 129 LLIWCEETLDGYEDVVKLKDFTVSWRDGLAFNAIIHAH 166
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 34.3 bits (75), Expect = 0.082
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 206 RNSLLKWCQQKTFGYNNIDITNFSSSWNDGLALCALLHSYLGEGRVP-YSTLSPHDKRTN 382
+ +LL W + K ++ + NF++ WNDG A+ L+ + + G +P L P D N
Sbjct: 496 KQALLAWVKSKM--PESVPMDNFTTHWNDGRAIACLVDA-VAPGLLPECEDLDPKDALQN 552
Query: 383 FSVAFAAAES-VGIPTTL 433
A A+ + IP L
Sbjct: 553 AQQAMKLAQDWLDIPQVL 570
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 260 DITNFSSSWNDGLALCALLHSYLGEGRVPYS 352
DI NF + W DG+A+C L+++ L G +P S
Sbjct: 445 DINNFDTDWRDGMAICELVNA-LQPGLIPDS 474
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 423 GMPTDSAAAKATEKLVLLSCGDSVEYG--TRPSPRYECSSAHNASPSFHDELK 271
G PT A + + S G +V T P PRY+ SSA N+SP+ H +++
Sbjct: 867 GTPTPPPPAARSSPVAFGSGGSTVPGSAVTHPVPRYDNSSA-NSSPARHRDVE 918
>SB_40597| Best HMM Match : Dynein_heavy (HMM E-Value=0.55)
Length = 403
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = -1
Query: 517 PLT*NLKLDSFLWVL----MRSKINPNAPCTYQRGRDAHGLRSCEGH 389
P N LD F+W++ + K PN PC + G S GH
Sbjct: 325 PCRINTFLDGFMWIIPGEKSKFKSKPNYPCPVYKTSARRGTLSTTGH 371
>SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7)
Length = 284
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 385 LSGLRSCGVRGHPDHAGTYTVHSDLFCFSSRPKENCPIL 501
L G G +GHP HA + ++ C+ S P E C +L
Sbjct: 106 LEGKDKYGRQGHPQHASSMQNNTPP-CYGSTPYEPCELL 143
>SB_20018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -3
Query: 470 EKQNKSECTVYVPAWSGCPRTPQLRRPLRSWSSYRAATAWSTARGPRPGTSAAARTTPAH 291
EK+ + T W+ + + RP + +S + ST + R S AA T PA
Sbjct: 89 EKEEAEKKTHVEDLWASFKKETEAVRPKSTVASSGSKLTKSTEKLQRQSPSVAASTKPAA 148
Query: 290 RSTTS 276
+ST++
Sbjct: 149 QSTSA 153
>SB_19921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 479 GLDEKQNKSECTVYVPAWSGCPRTPQLRRPLRS 381
GL EK + CT P +G P P+L P+ S
Sbjct: 374 GLGEKSRERTCTNPTPKGNGRPCNPRLGEPIES 406
>SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53)
Length = 327
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 481 KENCPILNFRLKEFLFLLIKTQRKITNCQSQMKEC 585
K+NCP L+ ++ + ++ QR ++NC + C
Sbjct: 114 KQNCPTLSIQVCDMSLNSLRVQRCVSNCPLYLTVC 148
>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +2
Query: 200 SKRNSLLKWCQQKTFGYNNIDITNFSSSWNDGLALCALLHSYLGEGRVPYSTLSPHDKRT 379
S + LL W + + I N ++ WN G+AL AL++ + ++P +
Sbjct: 153 SGKQLLLLWLKN---ALPELKIGNVTTDWNSGIALAALINFCDPRLMTDWREMNPDNSIA 209
Query: 380 NFSVAFAAAE 409
N A AE
Sbjct: 210 NVKKAMKCAE 219
>SB_58067| Best HMM Match : TPR_2 (HMM E-Value=0)
Length = 593
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 290 DGLALCALLHSYLGEGRVPYSTLSPHDKRTNFSVAFAA 403
D L L +H+ G+G S + H K+ NF VA A+
Sbjct: 476 DALRLFEKIHNDQGQGDAHLSIGNTHSKQGNFEVAIAS 513
>SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 290 DGLALCALLHSYLGEGRVPYSTLSPHDKRTNFSVAFAA 403
D L L +H+ G+G S + H K+ NF VA A+
Sbjct: 775 DALRLFEKIHNDQGQGDAHLSIGNTHSKQGNFEVAIAS 812
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 384 KLVLLSCGDSVEYGTRPSPRYECSSAHNASPSFHDE 277
++++LSC + RPSPR S A P+ +D+
Sbjct: 994 RVLVLSCFSQASWTRRPSPRGRLHSPIQARPNRNDQ 1029
>SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -3
Query: 536 MRRKRNSFNLKFKIGQFSLGLDEKQNKSECTVYVPAWSGCPRTPQLRRPLRSWSSYR 366
M ++FN G FS+G D +N ++ V+V P PQ+RR + S + YR
Sbjct: 150 MSHATSTFNTSIPYGSFSIGSDRSRN-TQGMVHVG-----PSKPQMRRKVSS-NRYR 199
>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
Length = 801
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 395 RPLRSWSSYRAATAWSTARGPRPGTSAAAR 306
RP +RAAT W A GP T++ +R
Sbjct: 311 RPCACAPRHRAATTWFRAAGPTTATASPSR 340
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,119,446
Number of Sequences: 59808
Number of extensions: 350123
Number of successful extensions: 1086
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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