Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0641
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.79 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   5.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.8  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 208 QFPTEVVSTEDVRIQQYRYHEFQLVVER 291
           +F        D  + Q  YHEFQ++ ER
Sbjct: 284 EFAVSTRILRDENLSQNSYHEFQILPER 311


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -3

Query: 470 EKQNKSECTVYVPAWSGCPRTPQLRRPLRSWS 375
           EK+      +++P+W G    P + +P   W+
Sbjct: 17  EKEQMMNILMFLPSWDGKMPQPCILKPKPLWT 48


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 248 YNNIDITNFSSSWNDGL 298
           Y N +I  F+  W DGL
Sbjct: 223 YGNYNINGFNFQWKDGL 239


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +2

Query: 236 KTFGYNNIDITNFSSSWNDGLALCALLHSYLGEGRVPYSTLSPH 367
           K+FGYN++   +  + + + +  C L H   G  +     +  H
Sbjct: 239 KSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTH 282


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +1

Query: 469 SSRPKENCPILNFRLKEFLFLLIKTQRKITNC 564
           S R   N  ++N  + +FL +   +   + NC
Sbjct: 48  SLRTPSNLFVINLAISDFLMMFCMSPPMVINC 79


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 451 NAPCTYQRGRDA 416
           NA C Y +G+DA
Sbjct: 333 NAMCAYAKGKDA 344


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 443 RCIRIYFASHQDPKK 487
           RC   YF + +DPKK
Sbjct: 297 RCDPGYFRAEKDPKK 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,918
Number of Sequences: 438
Number of extensions: 3646
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)