Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0641
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ...    28   5.8  
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ...    27   7.7  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    27   7.7  

>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893, fimbrin [Schizosaccharomyces pombe]
           GI:3057144; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 687

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 215 LLKWCQ--QKTFGYNNIDITNFSSSWNDGLALCALLHSYLGE 334
           LLKW     K  GY    +TNFSS   DG A   LL++   E
Sbjct: 273 LLKWMNFHLKKAGYEK-QVTNFSSDLKDGEAYAYLLNALAPE 313


>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 652

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 215 LLKWCQ--QKTFGYNNIDITNFSSSWNDGLALCALLHSYLGE 334
           LLKW     K  GY    +TNFSS   DG A   LL++   E
Sbjct: 267 LLKWMNFHLKKAGYEK-QVTNFSSDVKDGEAYAYLLNALAPE 307


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 422 GCPRTPQLRRPLRSWSSYRAATAWSTARGPRPGTSAAARTTPAHRST 282
           G P TP  R  + + +S   +++  T    +P  S+   +TPAH ST
Sbjct: 452 GQPTTPSFRSTVSNTTSVFGSSSSLTTNTSQPLGSSIFGSTPAHGST 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,180,977
Number of Sequences: 28952
Number of extensions: 246425
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)