Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0640
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_6397| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25)             30   2.1  
SB_45849| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   29   3.6  
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   3.6  
SB_53178| Best HMM Match : Homeobox (HMM E-Value=2.5e-26)              29   4.8  
SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 682  CNRISPPIWTGYPGRAEAEGSPPSRPRHGCTPRTFFHWSFLYCPSY 545
            CN  SP +  G    ++AE SP  RP + C     FH    YC SY
Sbjct: 1114 CNPTSPCLNGGICLLSDAEASPGRRPNYTCLCLANFHGR--YCESY 1157


>SB_6397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 499 LQTPPSRLESAPNVWDTTGNTKRTSERKCE 588
           L  PP+ ++S P  WD+ G+  ++S + CE
Sbjct: 148 LANPPTTVQSFPRNWDSQGSLSQSSGQICE 177


>SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25)
          Length = 203

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 337 VCTEAYTNSAGKCTPADTCRSAKEDFVQNGIRPTFCAYTTFGIALVCCRDGSSIL 501
           +CT        +C+ +   R  K DF+QN  R T C    F   L+  R  S+ +
Sbjct: 45  ICTNTSCGLLRECSTSRIARFPKRDFIQNQERKTSCFNHRFCSNLLLLRGFSTFI 99


>SB_45849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 373 CTPADTCRSAKEDFVQNGIRPTFCAYTTFGIALVCCRDGSSILQTPPSRLES 528
           C+ +   R  K DF+QN  R T C    F   LV  R  S+ + T   + +S
Sbjct: 96  CSTSRIARFRKRDFIQNQERKTSCFKHRFRSNLVLLRGFSTFIITSNGQTKS 147


>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 508  PPSRLESAPNVWDTTGNTKRTSER 579
            PPS + S PN W+T+ +T  T  +
Sbjct: 933  PPSAVASIPNTWETSADTTGTGNK 956


>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 165

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 340 CTEAYT-NSAGKCTPADTCRSAKEDFVQNGI 429
           C E Y  NS GKC   + C++ K D   N +
Sbjct: 29  CAEGYERNSQGKCADVNECKTGKHDCSVNAL 59


>SB_53178| Best HMM Match : Homeobox (HMM E-Value=2.5e-26)
          Length = 428

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -3

Query: 666 RRYGQDIRVGQKRKVVH-----LLDHATAVLLALSFTGPFCIARRIPNIRSTF*SRRRRL 502
           RRYG  ++    +K  H     LL H    ++  + TGP  I  +IP  +    S  ++ 
Sbjct: 193 RRYGSKVKNSSVKKAKHAHKPVLLSHERRTVIKANATGPASINTKIPEEKEQNPSPSQKK 252

Query: 501 KYT 493
           ++T
Sbjct: 253 RFT 255


>SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1174

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/42 (28%), Positives = 15/42 (35%)
 Frame = -2

Query: 610 RPRHGCTPRTFFHWSFLYCPSYPKH*EHFLISKAAFEVYCFH 485
           R     +PR   HW   +C  Y       L    A  + CFH
Sbjct: 821 RDSKAASPRCLAHWCSEHCSVYDAEYPALLTPSGAASIECFH 862


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,103,269
Number of Sequences: 59808
Number of extensions: 397678
Number of successful extensions: 1589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)