Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0640
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55650.1 68418.m06939 hypothetical protein                          29   2.9  
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont...    29   2.9  
At1g33680.1 68414.m04166 KH domain-containing protein similar to...    28   5.1  
At5g11540.1 68418.m01346 FAD-binding domain-containing protein s...    27   9.0  

>At5g55650.1 68418.m06939 hypothetical protein 
          Length = 154

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 206 LFVRN*IYVLRIFNAKTKCCLTDSN 280
           LFV + +++LRIF  KT+ CL + +
Sbjct: 54  LFVSSSVFLLRIFKEKTRLCLAEGS 78


>At5g45510.1 68418.m05590 leucine-rich repeat family protein contains
            leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 1222

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +1

Query: 274  FQLLFLVYLIRETGCQINEGDV-------CTEAYTNSAGKCTPADTCRSAKED 411
            F+ +F + ++  +G Q+   ++       C + +T + GKC   DT R  KED
Sbjct: 926  FEKMFYLRVVDLSGTQVETPELPADTKIHCLKRFTRADGKCFERDTWREIKED 978


>At1g33680.1 68414.m04166 KH domain-containing protein similar to
           FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
           sapiens]
          Length = 759

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 667 PPIWTGYPGRAEAEGSPPSRPRHGCTPRTFFHWSFLYCPSY 545
           PP     PG    +G  P+ P +G TP    + S    PSY
Sbjct: 561 PPRPAAPPGDVPYQGPTPAAPSYGSTPAAASYGSTPAAPSY 601


>At5g11540.1 68418.m01346 FAD-binding domain-containing protein
           similar to hypothetical protein [Oryza sativa
           (japonica)][GI:18844891]; contains PF01565 FAD binding
           domain
          Length = 585

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 346 EAYTNSAGKCTPADTCRSAKEDFVQNGIRPTFCAYTTFGI 465
           E+  N  GKCT ADT  + K+  + NG++ +   +T + +
Sbjct: 315 ESSKNENGKCTTADTTLAYKK-LIGNGLKNSGLIFTGYPV 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,267
Number of Sequences: 28952
Number of extensions: 267833
Number of successful extensions: 639
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)