Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0639
         (470 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5DWH2 Cluster: Putative uncharacterized protein; n=1; ...    34   1.8  
UniRef50_Q24535 Cluster: Serum response factor homolog; n=3; Dip...    33   2.4  

>UniRef50_A5DWH2 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 1046

 Score = 33.9 bits (74), Expect = 1.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 222 GGGPRPDRATSCRGAVLVL-VLEHKPALGGQRPASAQLVQQHGGAPHRQ 365
           G G + D+  +  G  L        PA G   P+S Q+ Q HGG+PH Q
Sbjct: 796 GLGSKSDKPHNITGGSLASHTFRLDPAAGYIEPSSPQVAQAHGGSPHTQ 844


>UniRef50_Q24535 Cluster: Serum response factor homolog; n=3;
           Diptera|Rep: Serum response factor homolog - Drosophila
           melanogaster (Fruit fly)
          Length = 449

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 294 PALGGQRPASAQLVQQHGGAPHRQRP 371
           PALG  RP S  L+Q  GG P  QRP
Sbjct: 33  PALGAGRPPSGGLLQNMGGVPPMQRP 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,256,922
Number of Sequences: 1657284
Number of extensions: 3591124
Number of successful extensions: 12941
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12936
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)