Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0639
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0558 + 11477433-11477525,11477632-11477973,11481854-114823...    29   1.4  
12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047           27   7.6  
05_01_0137 + 917533-917814,918080-918352                               27   7.6  

>02_02_0558 +
           11477433-11477525,11477632-11477973,11481854-11482381,
           11482459-11482956
          Length = 486

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 222 GGGPRPDRATSCRGAVLVLVLEHKPALGGQRPASAQLVQQHGG 350
           GGG R + A +   A  VL+LEH PA GG  P++       GG
Sbjct: 35  GGGDREEEAAA-EAAPEVLLLEHFPA-GGTSPSAEGTGNDQGG 75


>12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047
          Length = 162

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 246 ATSCRGAVLVLVLEHKPALGGQRPASAQLVQQHGGA 353
           ATSC G V V V E + +LGG   + A+ V   GGA
Sbjct: 20  ATSCAGGVDVTVYEKEDSLGG---SFARTVGVDGGA 52


>05_01_0137 + 917533-917814,918080-918352
          Length = 184

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 138 PTLASESDTRQRTTLPPRSPLSTWRSYCSK 49
           PT +S + T   TT PP  P    RS+C +
Sbjct: 54  PTTSSPAPTTTTTTSPPPPPSFRRRSFCRR 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,633,203
Number of Sequences: 37544
Number of extensions: 119296
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)