Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0639
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3219| Best HMM Match : Ribosomal_L31 (HMM E-Value=1.7)              28   4.5  
SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)                     27   7.8  

>SB_3219| Best HMM Match : Ribosomal_L31 (HMM E-Value=1.7)
          Length = 528

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 172 TPPALAPTRPITYSSERKRHTTTNDSATAQSSQY 71
           T P   PT    Y +E KR++T  D+  ++S QY
Sbjct: 253 TKPEHYPTETKYYPTEIKRYSTETDNYPSKSEQY 286


>SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)
          Length = 428

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 200 NNRVLNRRPNAARPRTDPTNYL 135
           ++RV+ RRP   RPR++ T Y+
Sbjct: 388 HHRVIPRRPGEIRPRSEHTQYV 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,209,973
Number of Sequences: 59808
Number of extensions: 120183
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)