Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0638
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    38   0.001
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    28   1.3  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    28   1.3  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   4.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   4.0  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   5.2  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   9.1  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   9.1  

>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 522 YYVTVIEDTRINKLIGAATLTIEQKFIHNCSLRGRLED 635
           YY+ V+ED   + +IG ATL +E+KF+    + G +E+
Sbjct: 9   YYIIVVEDLESHHVIGTATLFLERKFLRGKGICGHIEE 46


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 367 TALILG*NFAGLLLKSSLFNISGG*R 290
           T L+L    AG  +++SLFN+ GG R
Sbjct: 19  TGLLLALGLAGFAVQTSLFNVDGGHR 44


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/43 (20%), Positives = 24/43 (55%)
 Frame = +3

Query: 435 QLLSQLTSVGNITRKQYDDRFTKMKHSGGYYVTVIEDTRINKL 563
           + + ++ +  ++ +     ++T+ K + G Y + +ED +IN L
Sbjct: 395 RFVGRVANATDVVQFYLKKKYTRSKRNDGLYTSAVEDIKINSL 437


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 528 VTVIEDTRINKLIGAATLTIEQKFIHNCSL 617
           +TV  D   NK + A T+T+E   IH   L
Sbjct: 629 MTVARDLSYNKRLNAKTVTLEGTVIHKTGL 658


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 285 RRVSLPHFRSFPCPFCGFFLIYLSIQTDISILYLPIPILFNY 160
           RR+  PHF  F   +  FF I L I T I + Y    I +N+
Sbjct: 33  RRIFRPHFSQFWTIWMKFFSIALVIITQIYVGYKTKNIGWNF 74


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 300 PEILKRLDFSKSPAKFHPKISAVDP 374
           P +L  LDF  S  + HP + ++DP
Sbjct: 364 PSLLAALDFRSSNEEQHPGLRSLDP 388


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = +3

Query: 366 VDPGEDWMIVRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSGGYYVTVIED 545
           +DP E   ++  L+ + Y       +S+ T  G +     D     +    GY V ++ D
Sbjct: 234 LDPAESGAVIPVLELNGYK------ISERTIYGCMD----DSELLSLFSGFGYEVAIVND 283

Query: 546 TRINKLIGAATLTIEQKFIHNCSLRGRL 629
           T     + AAT+    + IH+   R R+
Sbjct: 284 TPDQNRVMAATMDWAVERIHDIQHRARV 311


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 60  ETTQAARSSPLPLVTFTLP 116
           E TQ   +SP PLVT +LP
Sbjct: 416 EKTQPTNASPAPLVTPSLP 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,477
Number of Sequences: 5004
Number of extensions: 49197
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)