Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0638
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250     58   8e-09
02_05_0531 + 29811356-29811856                                         45   6e-05
07_01_0086 + 672173-673603                                             28   7.1  

>09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250
          Length = 231

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = +3

Query: 393 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSGG-YYVTVIEDTRINKLIG 569
           +RPL+ +D  +GFL LL+QL+    +T + +  RF ++   G  + V V ED    +L  
Sbjct: 24  IRPLELADISRGFLGLLNQLSPSPPLTEEAFRARFEELAALGADHLVLVAEDAATGRLAA 83

Query: 570 AATLTIEQKFIHNCSLRGRLED 635
           A  + +E+KFI  C   G +ED
Sbjct: 84  AGAVLVERKFIRRCGRVGHVED 105


>02_05_0531 + 29811356-29811856
          Length = 166

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
 Frame = +3

Query: 393 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSG-GYYVTVIEDTRI--NKL 563
           +R L+ +D++KGF+ LLSQL++  ++T  ++   F  +   G  + + V ED     +++
Sbjct: 23  IRRLEATDHEKGFVALLSQLSACPDLTASEFAACFADLAALGDDHVILVAEDPAAPESRI 82

Query: 564 IGAATLTIEQKFIHNCSLRGRLED 635
           +    L +E+KF+      G +ED
Sbjct: 83  LATGCLFVERKFLRGGGKVGHVED 106


>07_01_0086 + 672173-673603
          Length = 476

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 264 NAEGKLSEYLYPPEILKRLDFSKSPAK 344
           N  G L E+++PPE+   L F   PAK
Sbjct: 313 NRVGPLYEHVFPPELAPSLSFVGIPAK 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,375,131
Number of Sequences: 37544
Number of extensions: 314006
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)