Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0638
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44629| Best HMM Match : SoxD (HMM E-Value=3.6)                      73   1e-13
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  

>SB_44629| Best HMM Match : SoxD (HMM E-Value=3.6)
          Length = 115

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
 Frame = +3

Query: 291 LYPPEILKRLDFSKSPAKFHPK-ISAVDPGEDWMIVRPLQRSDYDKGFLQLLSQLTSVGN 467
           L+  ++LK +D+SK   K +   +S   PGED + +RPL   DYDK              
Sbjct: 6   LFDADVLKEIDYSKGDCKMNQYGLSCESPGED-LRLRPLASDDYDK-------------- 50

Query: 468 ITRKQYDDRFTKMK-HSGGYYVTVIEDTRINKLIGAATLTIEQKFIHNCSLRGRLED 635
                  +RF  M+ H G YY+ V+E+T+ +K++ + +L +EQKFIH  +LRGR+ED
Sbjct: 51  -------ERFNAMRDHHGTYYIIVVENTKADKILASGSLIVEQKFIHEIALRGRIED 100


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 339 PDSY*NPVFLISPEGKGIRRVSLPHFRSFPCPF 241
           PDS   PV+ + PEG G R ++L      PC F
Sbjct: 128 PDS---PVYELKPEGAGGRNITLQRNLLLPCDF 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,194,589
Number of Sequences: 59808
Number of extensions: 369372
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)