Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0638
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.27 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.7  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   7.6  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 282 RVSLPHFRSFPCPFCG 235
           RVS P  R++ CP CG
Sbjct: 64  RVSCPVLRAYTCPICG 79


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 258 SFPCPFCGFFLIYLSIQTDISILYLPIPILFNYR 157
           S   P    +L++  I   +SIL   I I +N+R
Sbjct: 290 SLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFR 323


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 345 FHPKISAVDPGEDWMIVRPLQRSDYDKGFLQLLSQLTSVGNI 470
           + P+   V     W +  P+  SD   GFL +L  +  V  I
Sbjct: 40  YGPEAGNVSCSVSWEVHDPVTNSDTYIGFLFVLGLIVPVFTI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,454
Number of Sequences: 438
Number of extensions: 3569
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)