Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0638
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15770.1 68418.m01844 GCN5-related N-acetyltransferase (GNAT)...    69   3e-12
At4g20810.1 68417.m03020 transcription initiation factor IIE (TF...    29   2.6  
At1g79150.1 68414.m09229 expressed protein ; expression supporte...    28   4.5  
At4g11230.1 68417.m01819 respiratory burst oxidase, putative / N...    27   7.9  

>At5g15770.1 68418.m01844 GCN5-related N-acetyltransferase (GNAT)
           family protein similar to SP|O93806
           Glucosamine-phosphate N-acetyltransferase (EC 2.3.1.4)
           (Phosphoglucosamine transacetylase) (Phosphoglucosamine
           acetylase) {Candida albicans}; contains Pfam profile
           PF00583: acetyltransferase, GNAT family
          Length = 149

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +3

Query: 393 VRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSG-GYYVTVIEDTRINKLIG 569
           +R L+ SD  KGF++LL QLT  G++T +++D RF +++  G  + + VIE+    K+  
Sbjct: 7   IRKLEISDKRKGFIELLGQLTVTGSVTDEEFDRRFEEIRSYGDDHVICVIEEETSGKIAA 66

Query: 570 AATLTIEQKFIHNCSLRGRLED 635
             ++ IE+KF+ NC   G +ED
Sbjct: 67  TGSVMIEKKFLRNCGKAGHIED 88


>At4g20810.1 68417.m03020 transcription initiation factor IIE
           (TFIIE) alpha subunit family protein / general
           transcription factor TFIIE family protein contains Pfam
           profile: PF02002 TFIIE alpha subunit
          Length = 416

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +3

Query: 384 WMIVRPLQRSDYDKGFLQLLSQLTSVGNITRKQYDDRFTKMKHSGGYYVTVIEDTRI 554
           W+I + +  SD  +G ++  ++    G+      DDR  K ++   YY  ++E+  +
Sbjct: 287 WLIKKGMNLSDEQRGEIRHEAKADDGGSSMENGDDDRNLKDEYLKAYYAAILEEQEL 343


>At1g79150.1 68414.m09229 expressed protein ; expression supported
           by MPSS
          Length = 495

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 486 DDRFTKMKHSGGYYVTVIEDTRINKLIGAATLTIEQKFIHNCSLRGRLED 635
           D ++ K       +V+ I+   INK  G   +T+E K+    S R  L++
Sbjct: 31  DLKYVKENTDYAQFVSQIDTAAINKQCGGRVMTVEDKYEEERSKRKTLQE 80


>At4g11230.1 68417.m01819 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase homolog F [gi:3242456], RbohAp108 [gi:2654868]
           from Arabidopsis thaliana, respiratory burst oxidase
           homolog [GI:16549087] from Solanum tuberosum; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 941

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 327 SKSPAKFHPKISAVDPGEDWMIVRPLQRSDYDKGFLQLLS 446
           S S  ++HP      PG+D++ +   QR D+ +G  +  S
Sbjct: 651 SVSKFEWHPFSITSSPGDDYLSIHIRQRGDWTEGIKKAFS 690


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,279,074
Number of Sequences: 28952
Number of extensions: 259887
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)