Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0637
         (389 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQ01 Cluster: Ferritin isoform 2; n=1; Bombyx mori|Re...   122   2e-27
UniRef50_Q9N2P3 Cluster: Ferritin precursor; n=7; Obtectomera|Re...    38   0.069
UniRef50_Q9AW08 Cluster: Putative uncharacterized protein; n=1; ...    33   1.5  
UniRef50_A6GIX1 Cluster: Putative uncharacterized protein; n=1; ...    32   4.5  
UniRef50_Q4TGM3 Cluster: Chromosome undetermined SCAF3605, whole...    31   7.9  

>UniRef50_Q1HQ01 Cluster: Ferritin isoform 2; n=1; Bombyx mori|Rep:
           Ferritin isoform 2 - Bombyx mori (Silk moth)
          Length = 139

 Score =  122 bits (295), Expect = 2e-27
 Identities = 55/55 (100%), Positives = 55/55 (100%)
 Frame = +3

Query: 225 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANE 389
           MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANE
Sbjct: 1   MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANE 55


>UniRef50_Q9N2P3 Cluster: Ferritin precursor; n=7; Obtectomera|Rep:
           Ferritin precursor - Manduca sexta (Tobacco hawkmoth)
           (Tobacco hornworm)
          Length = 232

 Score = 37.9 bits (84), Expect = 0.069
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 225 MKVYALIVACL-ALGVLAEEDSCYQNVDQGCRR---TLSLPHCSAYYGQFKDNHVVANE 389
           M      VACL AL      D+CYQ+V   C +   +L+LP+C+A Y ++  +  VA E
Sbjct: 1   MNPITFFVACLLALCGAVAADTCYQDVSLDCSQVSNSLTLPNCNAVYAEYGHHGNVAKE 59


>UniRef50_Q9AW08 Cluster: Putative uncharacterized protein; n=1;
           Guillardia theta|Rep: Putative uncharacterized protein -
           Guillardia theta (Cryptomonas phi)
          Length = 729

 Score = 33.5 bits (73), Expect = 1.5
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
 Frame = -2

Query: 229 FIFDAIYLVANSRKNNKCV*RMSKVLPLHTLAQKATSNNDSSR*KRPHKDNRL----*FI 62
           F++++ +L   S  NN  + R+SKV+ L+ L +KAT+NN ++  K   + N+      FI
Sbjct: 268 FLYNSFFLNFFSNINNYQL-RISKVIKLNNLIKKATANNYTNSQKLYFRQNKKIFNENFI 326

Query: 61  LIFYQRYD 38
             F+Q Y+
Sbjct: 327 YSFFQLYN 334


>UniRef50_A6GIX1 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 270

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 278 GRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSER 388
           GR+++S R   M  D + AAL+R+L  +  Q RC E+
Sbjct: 111 GRVLVSIRFTEMPVDIEGAALERLLAFLDAQLRCFEQ 147


>UniRef50_Q4TGM3 Cluster: Chromosome undetermined SCAF3605, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF3605,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 122

 Score = 31.1 bits (67), Expect = 7.9
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = -3

Query: 384 SLQRGCP*IGRNTRCSAADLKSVC-ILGRRSDSMSLPRPAHP-----EPDRQR*EHTPSY 223
           +L RGC  +G + R     L S C   G  S S+SLP P HP      P  QR  H P++
Sbjct: 63  TLDRGCACVGASVR----QLPSACRATGVYSSSLSLPGPLHPLSPRGLPTGQR--HAPNF 116

Query: 222 LMRF 211
              F
Sbjct: 117 CFSF 120


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,866,271
Number of Sequences: 1657284
Number of extensions: 7146379
Number of successful extensions: 17010
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17008
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 16143318346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)