Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0637
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 30 0.57
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 28 2.3
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 28 2.3
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 27 5.3
05_04_0310 + 20114415-20117819 27 5.3
05_04_0069 - 17639386-17641380 27 5.3
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 27 5.3
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083... 27 5.3
08_01_0022 - 163512-163817,165963-166032,166074-166151,166399-16... 27 7.0
11_06_0635 + 25704214-25704360,25705198-25705656 26 9.2
11_04_0081 - 13320073-13320639 26 9.2
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072... 26 9.2
04_04_0981 + 29912275-29912814 26 9.2
02_02_0643 + 12590928-12592172,12592609-12592698 26 9.2
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 30.3 bits (65), Expect = 0.57
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 197 IRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRM 313
IRH +N K+ C +SG C L++S R PRM
Sbjct: 739 IRHRVNLAKHTCTCREWQVSGKPCPHALALIISTRNPRM 777
>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 28.3 bits (60), Expect = 2.3
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +2
Query: 152 QYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKS 331
QY + T A++I S R + +Y G+ + + CA RGRL E R ++
Sbjct: 839 QYRQQTKAAVIIQSYCRSYLAHSQYMGL--KKAAITTQCAWRGRLARRELRKLKMAAKET 896
Query: 332 AALQRVLRPIQGQ 370
ALQ ++ Q
Sbjct: 897 GALQAAKNKLEKQ 909
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 181 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 270
CY E + L++ HQI C ++ S V +W C
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 380 YNVVVLELAVIRAAVRQT*SPSASLVDVLIA*VFLGQHTQSQTGNDE 240
YN V+LE A +RA+ T + +LVD L +F+ G+DE
Sbjct: 500 YNRVILENATVRASAVSTLAKFGALVDSLKPRIFVLLRRCLFDGDDE 546
>05_04_0310 + 20114415-20117819
Length = 1134
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 209 INRIKYEGVCSHRCLSGSGCAGRGRLML 292
+N+++ E C RCL G G GRG L
Sbjct: 48 LNQLRAEAGCVERCLGGGG-GGRGNCEL 74
>05_04_0069 - 17639386-17641380
Length = 664
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 105 DESLLEVAFCASVCKGSTFDIRQTHLL-FFREFATK*IASNMKVYALIVAC 254
+ S ++VA C ++ G + + + + L FREF + I N+ + IVAC
Sbjct: 216 ESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVAC 266
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 380 YNVVVLELAVIRAAVRQT*SPSASLVDVLIA*VFL 276
YN V+LE A +RA+ T + +LVD L +F+
Sbjct: 422 YNRVILENATVRASAVSTLAKFGALVDALKPRIFV 456
>01_06_1580 -
38406740-38407257,38407481-38407552,38408309-38408365,
38408476-38408532,38408643-38408699,38408809-38408865,
38409371-38409424,38409744-38409800,38410023-38410076,
38412208-38412220,38413530-38413580,38414134-38414193,
38414640-38414761,38415033-38415894,38416468-38416667,
38417159-38417238,38417525-38417619
Length = 821
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 357 GRNTRCSAADLKSVCILGRRSDSMSLPRPAHPEPDR 250
G NT D KSV ++ SD P P EP+R
Sbjct: 662 GGNTSRRLNDRKSVIVIDSDSDEDEDPHPEQHEPER 697
>08_01_0022 -
163512-163817,165963-166032,166074-166151,166399-166439,
166830-166880,166997-167065,167924-168019,169217-169328,
169629-169774,169965-170015,170171-170281,170378-170447,
172496-172935
Length = 546
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 294 DSMSLPRPAHPEPDRQR*EHTPSYLMRFI*WRILE 190
+S S PRP HPE D E P + R + RILE
Sbjct: 10 ESSSPPRP-HPEADMVNKEKDPEEMKRKLKERILE 43
>11_06_0635 + 25704214-25704360,25705198-25705656
Length = 201
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 90 GRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFA 203
G FH D SLL+ AF A + + FFR+FA
Sbjct: 139 GLFHSDSSLLDDAFTAGYVRRQATGMYAAE--FFRDFA 174
>11_04_0081 - 13320073-13320639
Length = 188
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Frame = +1
Query: 256 WLWVCWPRKTHAIRTSTKDADGL*VC-----RTAARITANSRTTTL 378
WLW THA R + +D DG R AA TA R T+
Sbjct: 114 WLWARGGDGTHARREAGRDGDGAAAAMGWRRRQAAMATAARRQATM 159
>07_03_1362 -
26006159-26006461,26006691-26006841,26006975-26007212,
26007293-26007503,26007631-26007755,26007895-26008023,
26008540-26009326
Length = 647
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 138 WRRRRLPTMTRLDEN 94
WR++RLPT T L EN
Sbjct: 293 WRKKRLPTKTPLIEN 307
>04_04_0981 + 29912275-29912814
Length = 179
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +2
Query: 170 SNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQ----TDFKSAA 337
S + + R+ I R + G+ S +G G GRG +++ + RP+ + F+ A
Sbjct: 59 SGSAAVVGRVYSLIERERRMGLRSRSVAAGGGGGGRG-IVVRDERPKSRAFGWVSFRKAT 117
Query: 338 LQRVLRPIQG 367
RV+ G
Sbjct: 118 SDRVVEVDDG 127
>02_02_0643 + 12590928-12592172,12592609-12592698
Length = 444
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -3
Query: 279 PRPAHPEPDRQR*EH---TPSYLMRFI*WRILEKITSAFDVCRKYCLYTHWRRRRLPTM 112
PRP PEP + + +L+ + + EK T AFDV + W++ L T+
Sbjct: 251 PRPTMPEPGEVLARYLVESRGHLLMVVRFVSTEKATVAFDVFKLELKPPSWKKLTLDTL 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,260,015
Number of Sequences: 37544
Number of extensions: 204755
Number of successful extensions: 536
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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