Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0637
         (389 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                36   0.012
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.047
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                33   0.083
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   3.1  
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)              27   4.1  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)             27   5.4  
SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)            27   5.4  
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                 26   9.5  
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)               26   9.5  
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)                   26   9.5  
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +3

Query: 213 IASNMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 374
           ++S+MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 233 VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 355
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 33.1 bits (72), Expect = 0.083
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 225 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 374
           MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 224 YEGVCSHRCLSGSGCAGRGRLML 292
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 149 RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLS 256
           R + RH ++   +F R+ H  NR++Y+G  ++ C++
Sbjct: 367 RSHVRHEAS---LFGRMNHYENRVEYKGFTANICIA 399


>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
          Length = 245

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 201 RILEKITSAFDVCRKYCLYTHWRRRRLPTMTRLDENVRTKTTDCN 67
           R L+ + SA  VC +YCLY  W R R  ++  +   + T  TD N
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRARNKSLQDI-TTMFTPHTDWN 141


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 201 RILEKITSAFDVCRKYCLYTHWRRRR 124
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
          Length = 184

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 201 RILEKITSAFDVCRKYCLYTHWRRRR 124
           R L+ + SA  VC +YCLY  W R R
Sbjct: 100 RQLQALDSA--VCGQYCLYFLWHRAR 123


>SB_25895| Best HMM Match : Transposase_5 (HMM E-Value=0.05)
          Length = 590

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -3

Query: 171 DVCRKYCLYTHWR-----RRRLPTMTRLDENVRTKTTDCNLF 61
           D+    CL T  R     RRRLP   RL +    +T D NLF
Sbjct: 76  DIINDNCLLTLSRANQELRRRLPLKPRLHDRTVARTLDGNLF 117


>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 269

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 227 EGVCSHRCLSGSGCAGR 277
           +  C HRC+ G  C GR
Sbjct: 174 QSCCGHRCVFGKSCYGR 190


>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
          Length = 191

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 227 EGVCSHRCLSGSGCAGR 277
           +  C HRC+ G  C GR
Sbjct: 96  QSCCGHRCVFGKSCYGR 112


>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
          Length = 1216

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 201  RILEKITSAFDVCRKYCLYTHWRRRR 124
            R L+ + SA  VC +YCLY  W R R
Sbjct: 965  RQLQALDSA--VCGQYCLYFLWHRVR 988


>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = +3

Query: 105 DESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK*IASNMKVYAL----IVACLALGVL 272
           D+ LL VA    + K    +++Q+  + F +  +     N+KV+ +    +   L LG+L
Sbjct: 384 DKPLL-VAIVTPLMKRVHNEVQQSGEMVFVDATSNTEEHNLKVFVMCTHNVSGALPLGIL 442

Query: 273 AEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDN 371
              D     + QG +   S     A+ G+ K+N
Sbjct: 443 IASDERESTLKQGFKMLCSCLPEYAFNGRGKEN 475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,442
Number of Sequences: 59808
Number of extensions: 241582
Number of successful extensions: 535
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)