Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0637
         (389 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50890.1 68414.m05722 expressed protein                             27   5.9  
At2g37880.1 68415.m04650 expressed protein contains Pfam profile...    26   7.8  

>At1g50890.1 68414.m05722 expressed protein
          Length = 821

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 259 LWVCWPRKTHAIRTSTKDA 315
           +W CW    HA+R    D+
Sbjct: 679 IWTCWSNSVHALRVGDTDS 697


>At2g37880.1 68415.m04650 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 247

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 232 CMLSSLPVWLWVCWPRKT-HAIRTSTKD 312
           C+L S+PVW   C  RK   A+R S  +
Sbjct: 143 CLLRSVPVWTMFCNGRKLGFAVRRSANE 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,141,186
Number of Sequences: 28952
Number of extensions: 160431
Number of successful extensions: 352
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)