Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0636
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    30   0.36 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.83 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   1.1  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   3.3  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   4.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   4.4  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.8  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   7.7  

>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = +3

Query: 249 DPVTKQNIPPKPESKLAPLAPYVS-----PREQTRARVLSTVG 362
           DPVTKQ+IP + +  L+  A Y+S      REQ+R   L  +G
Sbjct: 163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALG 205


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 159  VPFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNI--PPKPESKLAPLAP 311
            +P VP+PS+   PV        P    S   PV K ++  PP P    AP  P
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +3

Query: 162  PFVPRPSL----VPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAP 311
            P VP+PS+    VP P +      KP      + P ++    PKP   + P+ P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 592 PPALAPTRPITYSSERKRHTTTNDSATAQS 503
           PP LAP   I  SS+  +H + N S T  S
Sbjct: 228 PPQLAPATAIAPSSQSSQHKSVNYSVTPSS 257


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 249 DPVTKQNIPPKPESKLAPLAPYVS-----PREQTRARVLSTVG 362
           DP TKQ+IP      L+  A Y+S      REQ+R   L ++G
Sbjct: 163 DPKTKQHIPYSERKSLSGTARYMSINTHLGREQSRRDDLESLG 205


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 113 VHLQRDAVDARGLGEGAVRAAAESRARPGDGLRAAH 220
           +HL+R+   A+ + E A+   ++ ++RP  GL++ H
Sbjct: 295 LHLERNYRSAKPILELALSIISQDKSRPKKGLKSNH 330


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +3

Query: 171  PRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRAR 344
            P P L     TA  R  +P  +       TK    P  +SK AP+A  VS  +QT+ R
Sbjct: 970  PFPRLATGGSTAAARGPRPVVQNK--PAATKPVSMPAAKSKPAPMANPVSTAQQTQNR 1025


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 282 PESKLAPLAPYVSPREQTRARVLSTVGQRERA 377
           PES +  +   VS   Q RA +L + G+R+ A
Sbjct: 198 PESVVMAMHQQVSAERQKRAEILESEGKRQAA 229


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = +3

Query: 105 PYRSTYSVTRSTLGDWEKVPFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKP 284
           P  ST+    S    +    F P P +    + A G     G       P  +Q+I P P
Sbjct: 287 PPASTFPSYNSNFTGFLPSSFNPSPLMTLSRLAA-GEPDNNGKVYYSYGPTQEQSILPLP 345

Query: 285 ESKLAPLAPY 314
           E+K   L PY
Sbjct: 346 ENKHEGLPPY 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,064
Number of Sequences: 5004
Number of extensions: 38204
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)