Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0636
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 36 0.023
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 30 1.5
SB_31153| Best HMM Match : fn3 (HMM E-Value=1.4e-20) 30 2.0
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_59064| Best HMM Match : Adeno_E1A (HMM E-Value=9.3) 29 3.5
SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34) 29 3.5
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 29 3.5
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 29 4.6
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 29 4.6
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 6.1
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.1
SB_55995| Best HMM Match : F5_F8_type_C (HMM E-Value=4.9e-15) 28 8.1
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 28 8.1
SB_21466| Best HMM Match : Xlink (HMM E-Value=1.2) 28 8.1
SB_3219| Best HMM Match : Ribosomal_L31 (HMM E-Value=1.7) 28 8.1
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05) 28 8.1
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 28 8.1
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 36.3 bits (80), Expect = 0.023
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 126 VTRSTLGDWE-KVPFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPP-KPESKLA 299
VT +T E K P P PS +P P T + P A P+ + +PP P A
Sbjct: 164 VTETTTTKPETKPPKPPAPSTIPTPPTPPAPPSPPIPTAPPTPPMPETPLPPGSPHIPPA 223
Query: 300 PLAPYVSPREQTRARVLST 356
PL P++ P ++ ++T
Sbjct: 224 PLHPHIPPAPPNPSKAIAT 242
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +3
Query: 159 VPFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSP 323
+P P P P+P F P P PP P LAP PY+ P
Sbjct: 247 MPETPLPPATPNP---FIPPASPNPSIPPAPPNPSIPAPPNPSIPLAPPNPYIPP 298
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 162 PFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPR 326
P P P+++ P T+ T P S P P + +S PL Y +PR
Sbjct: 141 PCTPVPAVLHSPRTSLAVYTSPRVHNSPRTPFLAYTSPREHQSPRTPLPAYFTPR 195
>SB_31153| Best HMM Match : fn3 (HMM E-Value=1.4e-20)
Length = 407
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +2
Query: 197 GDGLRAAHQAGHARLRAGPRHQTKHPAETGVEVGASRALRISARTNARACAFYRWTAGAR 376
G + + Q H +LR+G + +T H A+ + L N C Y AR
Sbjct: 266 GPNPQRSEQRNHHQLRSGTKFRTSHSAKAVPSRVLNSTLTYIVLHNLENCTIYHLRVRAR 325
Query: 377 VRGGP 391
GP
Sbjct: 326 TGKGP 330
>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1422
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 221 GAPPEGRHRVGHETRPRHERHLLPVPERRP 132
G PPEG H+ H P E+H PER P
Sbjct: 1061 GTPPEGHHKHRHRGSPASEQH-GDRPERPP 1089
>SB_59064| Best HMM Match : Adeno_E1A (HMM E-Value=9.3)
Length = 336
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 177 PSLVPDPVTAFGRRTKPGTRASV-LDPVTKQNIPPKPESKLAPLAPYVSPREQTRARVLS 353
PS+ P P+ + R +P + + DPV KQ IPPK K Y+ R++ +S
Sbjct: 269 PSVAPVPIIS---RKEPDFQTPLKTDPVFKQPIPPKSSRKTPNPLKYM-----LRSKSVS 320
Query: 354 TVGQRERAFEADPLGT 401
T +++ E P+ T
Sbjct: 321 T-PNKQKHIECKPMST 335
>SB_31308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -3
Query: 221 GAPPEGRHRVGHETRPRHERHLLPVPERRPRHAVGGPVGPTRRVEVTLVYHG 66
G + ++ + RPRH RH+ E RH G P R V + HG
Sbjct: 249 GIVSKSETKISNTKRPRH-RHISLCQETITRHGPGTITTPPRHVPDNITRHG 299
>SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34)
Length = 354
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +2
Query: 146 GLGEGAVRAAAESRARPGDGLRAAHQA-GHARLRAGPRHQTKHPAETGVEVGASRALRIS 322
G G G R E+ RPG GL+ A +A+ R TK A+ + +A
Sbjct: 202 GRGRGQKRDWNETARRPGQGLQVKPAAESNAQTDRNARPPTKPTADLSQRTQSIQAADTR 261
Query: 323 ARTNARACAFYRWTAGARVRGGPS 394
+R A+ TA +V PS
Sbjct: 262 SRAQAKPATGPSPTADKQVADPPS 285
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 29.1 bits (62), Expect = 3.5
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +3
Query: 168 VPRPSLVPDPVTAFGRRTKPGTRASVLD-PVTKQNIPPKPESKLAPLAPYVSPREQTRAR 344
V RP +P VT + GTR L VT+ + P+ ++L L P V R T R
Sbjct: 191 VTRPDTLPRVVTCLDTLPRVGTRLDTLPRVVTRLDTLPRVVTRLDTL-PRVVTRLDTLPR 249
Query: 345 VLSTVGQRERAF-EADPLGTPRDHMDVL 425
V++ + R D L PR +D L
Sbjct: 250 VVTRLDTLPRVVTRLDTL--PRTRLDTL 275
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +3
Query: 93 TTRRPYRSTYSVTRSTLGDWEKVPFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNI 272
TTRRP +ST+ + T + P +P+ P T RRT+ T + +
Sbjct: 509 TTRRPRKSTHRPKKPTRRPRKNSPRTRKPTRRPRKNTHKSRRTRKTTPQPTTQYYSTSHD 568
Query: 273 PPKPESK 293
P +SK
Sbjct: 569 PMTSQSK 575
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -1
Query: 460 AACSGRPCAWASSTSMWSRGVPRGSASNARSRCPTVESTRARVCSRGDT*GARGAN 293
A SG P + ++S + G P A + + PT S G T G+ GAN
Sbjct: 543 AGTSGAPTSVPPASSAPASGAPPSGAPASGATTPTTGPISGAPASNGPTSGSTGAN 598
>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +3
Query: 93 TTRRPYRSTYSVTRSTLGDWEKVPFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNI 272
TTRRP +ST+ + T + P +P+ P T RRT+ T + +
Sbjct: 146 TTRRPRKSTHRPKKPTRRPRKNSPRTRKPTRRPRKNTHKSRRTRKTTPQPTTQYYSTSHD 205
Query: 273 PPKPESK 293
P +SK
Sbjct: 206 PMTSQSK 212
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +3
Query: 153 EKVPFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAP 302
+++P RP L+P R T P T + P T P KP + P
Sbjct: 23 QQIPHHQRPPLLPSQQLPHNRTTTPTTPTTTTPPAT--TTPTKPTNTTPP 70
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 245 HGGARARLGAPPEGRHRVGHETRPRHERHLLPVPERRPRHAV 120
HG RARL +GR+R + L V RRP+ +
Sbjct: 1785 HGANRARLHIKKQGRYRGAWSAKHNTRYQFLQVTFRRPKKVI 1826
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 245 HGGARARLGAPPEGRHRVGHETRPRHERHLLPVPERRPRHAV 120
H RARL +GR+R R + L V RRP+ +
Sbjct: 3594 HAANRARLHIRRQGRYRGAWSARHNNRNQYLQVSFRRPKEVI 3635
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 245 HGGARARLGAPPEGRHRVGHETRPRHERHLLPVPERRPRHAV 120
H RARL +GR+R R + L + RRP+ V
Sbjct: 2390 HAANRARLHIRRQGRYRGAWSARHNNRNQYLQIDFRRPKKVV 2431
>SB_55995| Best HMM Match : F5_F8_type_C (HMM E-Value=4.9e-15)
Length = 335
Score = 27.9 bits (59), Expect = 8.1
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +3
Query: 177 PSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESK---LAPLAPYVSPREQTRA-R 344
P L A RRT P TRA VL + + N K LA +A V + T A R
Sbjct: 88 PVLAKMAELALTRRTTPATRALVLVGIRELNAKIKSNRATPVLARMAELVLTKRTTPATR 147
Query: 345 VLSTVGQRE 371
L VG RE
Sbjct: 148 ALVLVGIRE 156
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 215 PPEGRHRVGHETRPRHERHLLPVPERRPRHAVGGPVGPTR 96
PP + R G PRH++ P+ E RP G P GP R
Sbjct: 472 PPYDQGRPGMPPGPRHDQSRPPLDEGRPPLDPGRP-GPGR 510
>SB_21466| Best HMM Match : Xlink (HMM E-Value=1.2)
Length = 347
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -3
Query: 263 FGDGVQHGGARARLGAPPEGRHRVGHETRPRHERHLLPVPERRPRHAVGGPV 108
F V G A L P EG+ H++ HE LLP+ ER + G P+
Sbjct: 193 FQSVVAPNGLIANLFGPIEGKR---HDSAMLHESGLLPLLERHAINTAGQPL 241
>SB_3219| Best HMM Match : Ribosomal_L31 (HMM E-Value=1.7)
Length = 528
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 595 TPPALAPTRPITYSSERKRHTTTNDSATAQSSQY 494
T P PT Y +E KR++T D+ ++S QY
Sbjct: 253 TKPEHYPTETKYYPTEIKRYSTETDNYPSKSEQY 286
>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
Length = 267
Score = 27.9 bits (59), Expect = 8.1
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = -1
Query: 562 TYSSERKRHTTTNDSATAQSSQ-YVA*LL**T*RCAACSGRPCAWASSTSMWSRGVPRGS 386
T+SS +R ND A + S+ V +L T R S +P + W +G
Sbjct: 8 TFSSRCRR----NDGAINKCSKTLVLTILASTLRKDTFSPKPDLATGLPTSWPQGDAATG 63
Query: 385 ASNARSRCPTVESTRARVCSRGDT*GARGANFDSGFGGMF 266
+ R R V+ TRA V RG G G F G GG F
Sbjct: 64 RGSTRDR-RRVKKTRASVGGRGGGFGG-GGGFGGGGGGGF 101
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 215 PPEGRHRVGHETRPRHERHLLPVPERRPRHAVGGPVGPTR 96
PP + R G PRH++ P+ E RP G P GP R
Sbjct: 238 PPYDQGRPGMPPGPRHDQSRPPLDEGRPPLDPGRP-GPGR 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,466,778
Number of Sequences: 59808
Number of extensions: 364747
Number of successful extensions: 1498
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -