Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0636
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.51 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.3  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 273 PPKPESKLAPLAPY 314
           PPKP++K  P +PY
Sbjct: 250 PPKPQTKTKPTSPY 263


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 592 PPALAPTRPITYSSERKRHTTTNDSATAQSS 500
           PPA + + P T ++     TTT  +A A ++
Sbjct: 96  PPASSTSLPATITTTTTTTTTTTATAAATAT 126


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 227 GHARLRAGPRHQTKHPA 277
           GH+ + A P H   H A
Sbjct: 422 GHSHIHATPHHHHSHAA 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,528
Number of Sequences: 438
Number of extensions: 3016
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)