Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0636
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    31   0.54 
At3g50580.1 68416.m05532 proline-rich family protein contains pr...    30   1.6  
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea...    30   1.6  
At5g22450.1 68418.m02618 expressed protein                             29   2.2  
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f...    29   2.2  
At2g47070.1 68415.m05881 squamosa promoter-binding protein-like ...    29   2.2  
At1g09040.1 68414.m01008 expressed protein                             29   2.2  
At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera...    29   2.9  
At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase fa...    29   2.9  
At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C...    29   2.9  
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea...    29   3.8  
At3g25250.1 68416.m03154 protein kinase family protein contains ...    28   5.0  
At5g53440.1 68418.m06641 expressed protein                             28   6.6  
At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger) fa...    28   6.6  
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    28   6.6  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    28   6.6  
At1g54970.1 68414.m06278 proline-rich family protein similar to ...    27   8.8  

>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/75 (24%), Positives = 31/75 (41%)
 Frame = +3

Query: 213 RRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRARVLSTVGQRERAFEADP 392
           + T P   +  + P   + IPPK +      A    PRE  R R++ +  ++    E   
Sbjct: 587 KATIPPKSSRTISPKANRTIPPKSKKTFPREAKRTIPREANRNRIMPSEAKKTIHPEDKR 646

Query: 393 LGTPRDHMDVLLAQA 437
              P DH+   + +A
Sbjct: 647 TTRPVDHLAFFIPKA 661


>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = +3

Query: 162 PFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSP 323
           P  P P   P P T     + P     V  P  K++  P P   L P AP  SP
Sbjct: 90  PPPPAPKKSPPPPTPKKSPSPPSLTPFVPHPTPKKSPSPPPTPSLPPPAPKKSP 143


>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to WD40-repeat containing protein Ciao 1
           (SP:O76071) [Homo sapiens]
          Length = 352

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 92  HDASALQVHLQRDAVDARGLGEGAVRAAAESRARPGDG 205
           HD +    H  RD + A G G+ A+R   +S+    DG
Sbjct: 266 HDRTIYSAHWSRDDIIASGAGDNAIRLFVDSKHDSVDG 303


>At5g22450.1 68418.m02618 expressed protein
          Length = 1180

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 214 RPKAVT-GSGTRLGRGTNGTFSQSPSVDRV 128
           RPK +  GSG  L RGT G  S +P++ +V
Sbjct: 22  RPKGIMLGSGNNLSRGTIGLSSDTPNLSQV 51


>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 631

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +3

Query: 111 RSTYSVTRSTLGDWEKVPFVPRPSLVPDPVTAF---GRRTKPGTRASVLDPVTKQNIPPK 281
           RS+ S  RS + D +K   +   S V + V +       ++  T A++ DPV +Q+  P 
Sbjct: 477 RSSSSCLRSEVKDEKKTDTLDTESCVKELVESSMVGAIESRSSTHATIEDPVCEQSPSPS 536

Query: 282 PESKLAPLAPYVSP 323
           P    +P +P  SP
Sbjct: 537 PSPSPSP-SPSPSP 549


>At2g47070.1 68415.m05881 squamosa promoter-binding protein-like 1
           (SPL1) identical to squamosa promoter binding
           protein-like 1 [Arabidopsis thaliana] GI:5931655;
           contains Pfam profile PF03110: SBP domain
          Length = 881

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 430 ASSTSMWSRGVPRGSASNARSRCPTVESTRAR--VCSRGDT*GARGANFDSGFGGMF 266
           A+ T+   +  P G++SN+ S C    + + R  V  +GDT GA   N +    G+F
Sbjct: 39  ATQTTRGRQFFPLGNSSNSSSSCSDEGNDKKRRAVAIQGDTNGALTLNLNGESDGLF 95


>At1g09040.1 68414.m01008 expressed protein
          Length = 911

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 3   GCRNSARGQRREETRT---ITRALTMVYESDFYTTRRPYRST 119
           G +N+  G RR+ TR     TRAL  + ESDF TT+R   +T
Sbjct: 773 GQQNNTDGPRRQSTRKRPLTTRALEAM-ESDFLTTKRMKSTT 813


>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
           putative similar to O-GlcNAc transferase, Homo sapiens
           [SP|O15294], Rattus norvegicus [SP|P56558]; contains
           Pfam profile PF00515: TPR Domain; identical to cDNA
           GI:18139886
          Length = 977

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 173 RHERHLLPVPERRPRHAVGGPVGPTRRVEVTLVYHG*CSCYRSGF 39
           R + ++  +P  +P HA+  P+ P   +E++  Y   CS   S F
Sbjct: 526 RRQINMSVLPSVQPFHAIAYPIDPILALEISRKYAAHCSIIASRF 570


>At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase
           family protein contains Pfam profiles PF00702: haloacid
           dehalogenase-like hydrolase, PF02130: Uncharacterized
           protein family UPF0054
          Length = 584

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 108 YRSTYSVTRSTLGDWEKVPFVP 173
           +R ++   RST+GDW K+P  P
Sbjct: 58  FRRSFHALRSTVGDWRKLPKPP 79


>At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase 2C GI:2582800
           from [Medicago sativa]
          Length = 380

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 162 PFVPRPSLVPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAPLAPYVSPREQTRA 341
           PF  R  L P     FG  + PG+      P T  +IP  P    AP++   +PRE++RA
Sbjct: 58  PFCLR-LLKPPAKLGFGSDSGPGSILKRKRPTTL-DIPVAPVGIAAPISNADTPREESRA 115


>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
           family protein HIRA protein, Drosophila melanogaster,
           PID:e1250847
          Length = 318

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 92  HDASALQVHLQRDAVDARGLGEGAVRAAAESRARPGDG 205
           HD +   VH  RD V A G G+  ++   +S +   DG
Sbjct: 242 HDRTIYSVHWSRDGVIASGAGDDTIQLFVDSDSDSVDG 279


>At3g25250.1 68416.m03154 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 421

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 147 DWEKVPFVPRPSLVPDPVTAFGRRTKPGTRASV 245
           DWEKV  V RP  +P P     + T   T+  V
Sbjct: 333 DWEKVILVSRPPYIPAPDDGGDKGTDVNTKMDV 365


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 267 NIPPKPESKLAPLAPYVSPREQTRARVLSTVGQRERAFEADPLGTPRDHM 416
           + PP+PES+    +P V PRE+     ++T G+ +R      +G  + +M
Sbjct: 596 SFPPRPESRSGVSSPRVGPREEDNR--VNTGGRYKRGGVDAMMGRGQSNM 643


>At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 327

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 252 PVTKQNIPPKPESKLAPLAPYVSPRE 329
           PV + ++PPKP S    L P++ P +
Sbjct: 167 PVCRASLPPKPGSDQNSLYPFIRPHD 192


>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245; contains Pfam profile
           PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/61 (27%), Positives = 20/61 (32%)
 Frame = -3

Query: 263 FGDGVQHGGARARLGAPPEGRHRVGHETRPRHERHLLPVPERRPRHAVGGPVGPTRRVEV 84
           F + V H      L   P   H   H   P H  H  P P   P      PV P  +  V
Sbjct: 23  FTEEVNHKTQTPSLAPAPAPYHHGHHHPHPPHHHH--PHPHPHPHPPAKSPVKPPVKAPV 80

Query: 83  T 81
           +
Sbjct: 81  S 81


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +3

Query: 162 PFVPRPSL-VPDPVTAFGRRTKPGTRASVLDPVTKQNIPPKPESKLAP 302
           P  P+P    P PV   G   KP    +          PPKPE+K  P
Sbjct: 99  PSPPKPPAPTPKPVPPHGPPPKPAPAPTPAPSPKPAPSPPKPENKTIP 146


>At1g54970.1 68414.m06278 proline-rich family protein similar to
           proline-rich protein GI:170048 from [Glycine max]
          Length = 335

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 51  ITRALTMVYESDFYTTRRPYRSTYSVTRSTLGDWEKVPFVPRPSLVPDPVTAFGRRTKPG 230
           I  +L  +  +D+Y    P   T  V + TL      P V +P+L P PV      T P 
Sbjct: 12  ILLSLATIATADYYAPSSPPVYTSPVNKPTLPPPVYTPPVHKPTL-PPPV-----YTPPV 65

Query: 231 TRASVLDPV-TKQNIPP 278
            + ++  PV TK  +PP
Sbjct: 66  HKPTLSPPVYTKPTLPP 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,197,611
Number of Sequences: 28952
Number of extensions: 233569
Number of successful extensions: 1090
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)