Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0635
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896...    37   0.017
03_01_0226 + 1795120-1795686,1796040-1796171                           37   0.017
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803...    29   4.6  

>04_04_0791 +
           28088237-28088809,28089311-28089430,28089585-28089662,
           28089808-28089938,28090390-28090435,28090529-28090636
          Length = 351

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = +3

Query: 276 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 398
           MPKK  G NSKA AAR+R+  A+ ++  + ++A E+  W +
Sbjct: 1   MPKKM-GVNSKAEAARERRSVAEADRRDRVERAKEEEYWRE 40


>03_01_0226 + 1795120-1795686,1796040-1796171
          Length = 232

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +3

Query: 276 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWE 395
           MPKK  G N+KA AAR+R+  A+ ++  +  +A E+A W+
Sbjct: 1   MPKKM-GVNTKAEAARERRSAAEADRRDRDARAKEEAYWQ 39


>02_05_0970 -
           33179180-33179210,33179297-33179441,33180307-33180362,
           33180650-33180691,33180814-33180866,33181059-33181490,
           33181630-33181707,33181785-33181870,33183588-33183689,
           33183754-33183960,33184976-33185336,33185463-33185626,
           33185709-33185817,33186468-33186485
          Length = 627

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 72  FYLVPRTSQVFCTAVNEVYILKFKRIQTLPVY 167
           FY +PR     C A    Y L++K +  L +Y
Sbjct: 535 FYSMPRDEAQLCAASELTYSLRYKNVDVLALY 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,047
Number of Sequences: 37544
Number of extensions: 240409
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)