Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0635
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)                44   2e-04
SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)                 33   0.22 
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    33   0.29 
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)                  30   1.5  
SB_24447| Best HMM Match : TolA (HMM E-Value=1.3)                      29   3.5  
SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)                  28   6.2  
SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)          28   8.1  
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)                   28   8.1  

>SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)
          Length = 265

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = +3

Query: 276 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 401
           MPKKF G NSKA  AR RK + K  + ++ ++  ED  WED+
Sbjct: 25  MPKKFKGVNSKAEEARARKASNKSAEKERKEREEEDKLWEDD 66


>SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)
          Length = 443

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/36 (36%), Positives = 26/36 (72%)
 Frame = +3

Query: 567 QISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRI 674
           Q++Q+++ MA+P +A+P P K+  ++  LE+ + RI
Sbjct: 352 QVAQSRQ-MARPSSARPAPPKIKKQQDELEDQVGRI 386


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 273  KMPKKFTGENSKAVAARQ-RKENAKLEKDQKTKKAVEDAE 389
            K  K+F    S+A A R+  KEN K E+ QKTKK   DA+
Sbjct: 1248 KRTKRFQNTKSEARAERKWLKENIKQEQYQKTKKKFPDAQ 1287


>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
          Length = 492

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 228 LTKLM*VFSIFQYLHKMPKKFTGENSKAVAARQRKENAKLEKDQKTKKAV 377
           LT LM    + QYLHK   +  G   ++      KE  +L+K  K K+ +
Sbjct: 24  LTTLMCALVLIQYLHKKYSRIPGPERESFIWGNAKEFQRLQKHGKRKEEI 73


>SB_24447| Best HMM Match : TolA (HMM E-Value=1.3)
          Length = 325

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 273 KMPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 401
           K+ K+F     K  A   +KE  + E D++ KK + DA  E N
Sbjct: 188 KLAKEFQKNKKKYAAEIDKKEKERKEIDKQIKKIIADAIAEAN 230


>SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)
          Length = 849

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -1

Query: 510 PIPFQAVPLLQLSFVIDLNVFFLALPFSVVSS*VYHHYLPILH 382
           P  +Q V      +V+D +  + ALP+  + + + HH +P+++
Sbjct: 286 PDRYQEVVGGMCQYVVDKHSSYGALPYDAIYAKIEHHLIPVIY 328


>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
          Length = 581

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -2

Query: 290 EFLWHFVQILEYRKYLHKLC*NFTHALLLHMYISIL 183
           +++WH  + L++ + L KL       + +H+Y+++L
Sbjct: 414 DYMWHKKRSLDHERILEKLPEKLRGQIAVHVYLAVL 449


>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
          Length = 906

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 276 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 398
           +P + T   S +  A Q  +  K  +D +TKKAV+D + E+
Sbjct: 526 IPSETTKPESLSEIAMQDTQTKKAVQDTQTKKAVQDIQAEN 566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,718
Number of Sequences: 59808
Number of extensions: 314146
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)