Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0635
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical ... 53 2e-07
U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoy... 29 4.1
Z70266-3|CAA94207.1| 71|Caenorhabditis elegans Hypothetical pr... 28 5.4
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 5.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.4
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p... 28 7.2
Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical p... 28 7.2
Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical p... 28 7.2
Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical p... 28 7.2
Z46267-10|CAA86425.1| 581|Caenorhabditis elegans Hypothetical p... 28 7.2
Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z99288-8|CAB16550.1| 231|Caenorhabditis elegans Hypothetical pr... 27 9.5
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 27 9.5
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 27 9.5
>AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical
protein Y73E7A.1a protein.
Length = 223
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/42 (57%), Positives = 27/42 (64%)
Frame = +3
Query: 276 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 401
MPKKF EN K AAR RK AK ++ K KA EDA+W DN
Sbjct: 1 MPKKFASENPKVTAARDRKATAKKDEADKKAKATEDAKWVDN 42
>U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 2, isoform b protein.
Length = 586
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +3
Query: 252 SIFQYLHKMPKKFTGENSKAV-----AARQRKENAKLEKDQKTKKAVEDAEWEDN 401
S F++LHK+P + T K+ A+QR+EN +L+K + + E +D+
Sbjct: 10 SPFRFLHKLPIRLTFTEKKSPLLISDLAKQREENDELKKRTHILECAWNQEHDDD 64
>Z70266-3|CAA94207.1| 71|Caenorhabditis elegans Hypothetical
protein C40C9.4 protein.
Length = 71
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 276 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 398
MP FT + +V Q +EN +L +QK K V+ +ED
Sbjct: 1 MPPFFTEKLQGSVEELQNQENEELTIEQKKKAGVDQNYFED 41
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 303 SKAVAARQRKENAKLEKDQKTKKAVED 383
S+ A + ++ +KLE + KTKK +ED
Sbjct: 10044 SEIAAKKSAEQKSKLETEAKTKKVIED 10070
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 303 SKAVAARQRKENAKLEKDQKTKKAVED 383
S+ A + ++ +KLE + KTKK +ED
Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 303 SKAVAARQRKENAKLEKDQKTKKAVED 383
S+ A + ++ +KLE + KTKK +ED
Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090
>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
protein F49E2.5j protein.
Length = 1100
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 297 ENSKAVAARQRKENAKLEKDQKTKKAVED 383
+ S AV + RK+N K +K +++KAVE+
Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508
>Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical
protein F49E2.5i protein.
Length = 1030
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 297 ENSKAVAARQRKENAKLEKDQKTKKAVED 383
+ S AV + RK+N K +K +++KAVE+
Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508
>Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical
protein F49E2.5g protein.
Length = 528
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 297 ENSKAVAARQRKENAKLEKDQKTKKAVED 383
+ S AV + RK+N K +K +++KAVE+
Sbjct: 397 DESTAVTSENRKKNKKDKKKSESEKAVEE 425
>Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical
protein F49E2.5f protein.
Length = 611
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 297 ENSKAVAARQRKENAKLEKDQKTKKAVED 383
+ S AV + RK+N K +K +++KAVE+
Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508
>Z46267-10|CAA86425.1| 581|Caenorhabditis elegans Hypothetical
protein F49E2.5e protein.
Length = 581
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 297 ENSKAVAARQRKENAKLEKDQKTKKAVED 383
+ S AV + RK+N K +K +++KAVE+
Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508
>Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical
protein F49E2.5a protein.
Length = 1215
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 297 ENSKAVAARQRKENAKLEKDQKTKKAVED 383
+ S AV + RK+N K +K +++KAVE+
Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508
>Z99288-8|CAB16550.1| 231|Caenorhabditis elegans Hypothetical
protein ZK262.9 protein.
Length = 231
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 582 KEKMAKPETAKPVPSKVVIEEPPL 653
+EK A ET +P P+ +++ PP+
Sbjct: 3 REKAASVETIRPTPANSIVKAPPV 26
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 297 ENSKAVAARQRKENAKLEKDQKTKKAVEDAE 389
E+ + A R+R++ + KD++ +KA DAE
Sbjct: 21 EDERQFAERRRQDEERRRKDEEDRKAKADAE 51
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 297 ENSKAVAARQRKENAKLEKDQKTKKAVEDAE 389
E+ + A R+R++ + KD++ +KA DAE
Sbjct: 125 EDERQFAERRRQDEERRRKDEEDRKAKADAE 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,910,671
Number of Sequences: 27780
Number of extensions: 241096
Number of successful extensions: 841
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -