Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0635
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb...    32   0.31 
At5g22130.1 68418.m02576 mannosyltransferase family protein simi...    31   0.72 
At2g21800.1 68415.m02591 expressed protein                             30   1.3  
At5g34540.1 68418.m04035 hypothetical protein                          28   6.7  
At5g37110.1 68418.m04454 hypothetical protein                          27   8.8  

>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
           gb|AA595092 come from this gene
          Length = 234

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 276 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 398
           MPKK  G NSKA  A+ RK  A+ E+  +  +  E+  W +
Sbjct: 1   MPKKM-GLNSKAEVAKSRKNAAEAEQKDRQTREKEEQYWRE 40


>At5g22130.1 68418.m02576 mannosyltransferase family protein similar
           to mannosyltransferase from Rattus norvegicus
           [GI:11414877], Homo sapiens [GI:11414879]; contains Pfam
           profile PF05007: Mannosyltransferase (PIG-M)
          Length = 450

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -2

Query: 254 RKYLHK-LC*NFTHALLLHMYISILFYYIYIHWERLYSLKLKDIHFVHSCT 105
           +++LH+ L  + T     H + SI FY+IY+H+ER +S   K I F+   T
Sbjct: 267 QEFLHEALLYHLTRTDPRHNF-SIYFYHIYLHYERQFSAVEKLISFLPQFT 316


>At2g21800.1 68415.m02591 expressed protein
          Length = 475

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 276 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAE 389
           +PKK   ++ K  AA ++K   + EK QK     EDAE
Sbjct: 186 LPKKKMSKDEKTRAAEEKKLQKEQEKLQKAASKAEDAE 223


>At5g34540.1 68418.m04035 hypothetical protein
          Length = 260

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +3

Query: 255 IFQYLHKMPKKFT-----GENSKAVAARQRKENAKLE-KDQKTKKAVED 383
           IF+Y+HK P + T       NSK     ++K NA ++  + K K  VED
Sbjct: 93  IFKYIHKEPDRVTVVVESSLNSKNKEKGKQKVNADIDGSEPKKKNEVED 141


>At5g37110.1 68418.m04454 hypothetical protein
          Length = 1307

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +3

Query: 255 IFQYLHKMPKKFT-----GENSKAVAARQRKENAKLE-KDQKTKKAVED 383
           IF+Y+HK P + T       NSK     ++K+NA  +  + K K  VED
Sbjct: 619 IFKYIHKGPDRVTVVVESSLNSKNKENGKQKDNADTDGSETKKKNEVED 667


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,906,850
Number of Sequences: 28952
Number of extensions: 210929
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)