Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0631
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36362| Best HMM Match : Asp (HMM E-Value=0)                        176   1e-44
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)                    43   2e-04
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.80 
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             29   4.3  
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)                 27   9.9  
SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)                      27   9.9  
SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)                      27   9.9  

>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score =  176 bits (429), Expect = 1e-44
 Identities = 86/125 (68%), Positives = 95/125 (76%), Gaps = 3/125 (2%)
 Frame = +1

Query: 280 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTPPQSFKVVF 450
           M T R    EVG  +E L  KY      G  PEPL NY+DAQYYG I+IGTPPQ F VVF
Sbjct: 1   MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTPPQKFTVVF 60

Query: 451 DTGSSNLWVPSKKCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDV 630
           DTGSSNLWVPSKKC +TNIACLLH+KYDS KS TY  NGT+FAI+YGSGSLSGFLS D V
Sbjct: 61  DTGSSNLWVPSKKCSWTNIACLLHDKYDSTKSSTYKKNGTEFAIRYGSGSLSGFLSIDTV 120

Query: 631 TVGGL 645
           +VGG+
Sbjct: 121 SVGGI 125


>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
          Length = 278

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 34/106 (32%), Positives = 47/106 (44%)
 Frame = +1

Query: 307 EVGTELELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSK 486
           + G ++ LLR K D    + E L       YY   ++G+PPQ   V+ DTGSSN  V + 
Sbjct: 11  KTGIKIPLLRTKRD-NNVAMENLKGRPGQGYYIASNLGSPPQRINVLVDTGSSNFAVAAS 69

Query: 487 KCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTD 624
              Y  I    H      KS +Y       ++ Y  GS  G L +D
Sbjct: 70  AHPY--IPYYFH----IDKSTSYKDLNKPVSVPYTQGSWEGELGSD 109


>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 268 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 384
           PL   ++ R H  ++ T LEL+  K   + PS +PL++Y
Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 256 LYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 372
           ++ V L  +K +  ++++ GT+L + +LK   T P P P
Sbjct: 244 IHDVLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282


>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
          Length = 1510

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 644  SPPTVTSS-VERKPERLPEPYCIANW 570
            SPP V S+ V R P R P+P    NW
Sbjct: 1234 SPPDVASTPVRRYPRRTPKPVRRVNW 1259


>SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)
          Length = 423

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 344 YFNL---NSSSSVPTS*KWVLAVFIRCNGTLYSAITELAISAKKNKDIFP 204
           YFN+   N ++++P +  + L  F+    T+Y  I ++A +  K K  FP
Sbjct: 89  YFNIKVANGTNNIPWTSPFELETFM--GSTVYKTIAKIAKTVSKGKKYFP 136


>SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)
          Length = 340

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 644 SPPTVTSS-VERKPERLPEPYCIANW 570
           SPP V S+ V R P R P+P    NW
Sbjct: 168 SPPDVASTPVRRYPRRTPKPVRRVNW 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,887,292
Number of Sequences: 59808
Number of extensions: 432009
Number of successful extensions: 1521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)