Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0630
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0) 31 0.85
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_47041| Best HMM Match : DUF1168 (HMM E-Value=0.41) 30 2.0
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 29 4.5
SB_45579| Best HMM Match : Calx-beta (HMM E-Value=1.8e-23) 29 4.5
SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05) 28 7.9
SB_23666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058) 28 7.9
SB_39243| Best HMM Match : HTH_7 (HMM E-Value=0.035) 28 7.9
>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
Length = 2232
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 163 YMIKVQIMNK*KRRNDYSSLRLL*VGGEGI----KTSQDLESMAFSIIHMRCDIWRSQLR 330
YM+++ + + R ++Y SLR E + K S+DL+ FS+ M + Q+
Sbjct: 2055 YMLRIAVRSLKMREDEYQSLRKKHSMSEMLDLLEKRSRDLDLSLFSLQAMWDSLLHDQVI 2114
Query: 331 LSTTHDE 351
S THDE
Sbjct: 2115 SSKTHDE 2121
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 31.1 bits (67), Expect = 0.85
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +2
Query: 398 REIDVIINGTSYLTSPNITNSDIFDDSEATGIANETTVTDSND--VVKDNYTAPIKIIKR 571
R +D + T LT +T +D D ++T + + T+TD+ND V N A I + +
Sbjct: 1616 RSLDREMKATYELT---VTATDRAGDPKSTSVEVDITITDANDNKPVFTNIPATILLSES 1672
Query: 572 DVTGTVVPNVQLSKENI 622
+ GT V V + ++I
Sbjct: 1673 TIPGTPVITVVATDQDI 1689
>SB_47041| Best HMM Match : DUF1168 (HMM E-Value=0.41)
Length = 225
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 491 IANETTVTDSNDVVKDNYTAPIKIIKRDVTGTVV--PNVQLSKENIIIYSGNSTRRI 655
++N+TT +ND DN A + I DVT TV NV+ + SGN +R+
Sbjct: 158 LSNDTT--PANDSKADNTQASVTEIDEDVTTTVASFKNVKTKLQQKDASSGNDNKRV 212
>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
Length = 1085
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 416 INGTSYLTSPNITNSDIFDDSEATGIANETTVTDSNDVVKDNYTAPIKIIKRDVTGTV 589
+N TSY S + N D D + + ETT N V+ D+Y I+ D G++
Sbjct: 23 LNLTSYSDSED-ENDDTQDGNLQSANKQETTSQTDNAVISDSYVHEIENQPTDFNGSI 79
>SB_45579| Best HMM Match : Calx-beta (HMM E-Value=1.8e-23)
Length = 253
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 473 DSEATGIANETTVTDSNDVVKDNYTAPIKI-IKRDVTGTVVPNVQLSKENIIIYS 634
D A G+ N TT+T ND + T + + I + T + +VQLS N +S
Sbjct: 95 DQVALGLLNTTTITIGNDDQVEEDTGYVTVNITKTGTSDISLDVQLSTNNGTAFS 149
>SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)
Length = 359
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 191 SKKDEMTILLYDYCELEERASKHLKTWKAWHLVLYICAAIFGVVNYVFL 337
S DE+ I+ D+ + R S++L+T +W L + A+F V ++FL
Sbjct: 129 SSNDELLIVKLDH--MRSR-SRYLRTLNSWAQELDLLIAVFLVHKFIFL 174
>SB_23666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 533 KDNYTAPIKIIKRDVTGTVVPNVQLSKENI 622
K ++ P +++RD TG++ P+ L+ ENI
Sbjct: 37 KAAFSPPTGVLRRDSTGSLSPDEDLTVENI 66
>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
Length = 1187
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 192 LIHNLHFYHVKEVIMPAINTRPIVHIFIGFFLILVNTYQTRIPFPHTHGHR-VHSQTSLV 16
+IH +YH + ++P+ +T +H G++ + + H HR H +T ++
Sbjct: 162 IIHAHRYYHPRTRVLPSTHTGITIHAH-GYYHLRTQVLPSTHTGITIHAHRYYHPRTRVL 220
Query: 15 PNS 7
P++
Sbjct: 221 PST 223
>SB_39243| Best HMM Match : HTH_7 (HMM E-Value=0.035)
Length = 694
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/56 (37%), Positives = 24/56 (42%)
Frame = +2
Query: 440 SPNITNSDIFDDSEATGIANETTVTDSNDVVKDNYTAPIKIIKRDVTGTVVPNVQL 607
SPN D+FD V D+ D D+ TAP D TG VVP V L
Sbjct: 604 SPNSAVRDVFDRD----------VLDNPDEYGDDQTAPPPDPDNDTTGVVVPPVNL 649
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,072,357
Number of Sequences: 59808
Number of extensions: 366577
Number of successful extensions: 1019
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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