Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0630
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote...    29   3.9  
U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical
           protein T08G3.2 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
 Frame = +2

Query: 257 HLKTWKAWHLVLYICAAIFGVVNYVFLQHTMKLIDNNCVLYPRQ--LEFREIDV----II 418
           HLK +  W+L++++C A++    +         +D+    Y RQ  +++ +IDV     +
Sbjct: 123 HLKYFDKWYLLIWVCYAVWFEFQWGGGIFKFDEVDDYSEEYTRQTMMDYYQIDVSEVPCL 182

Query: 419 NGTSYLTSPNITNSDI 466
               Y T PN T++ I
Sbjct: 183 VNVVYQTIPNSTDTFI 198


>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
            UNC-53 protein.
          Length = 1583

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = +2

Query: 383  RQLEFREIDVIINGTSYLTSPNITNSDIFDDSEATGIANETTVTDSNDVVKDNYTAPIKI 562
            +QL+ +E+D + NG +   S   +   I+DD      A  +T + S    + +    IK+
Sbjct: 1101 KQLK-KEVDKLTNGPATRASSRASIPVIYDDEHVYDAACSST-SASQSSKRSSGCNSIKV 1158

Query: 563  -IKRDVTGTVVPNVQLSKENIIIYSGNST 646
             +  D+ G +   V   KE I+ Y   ST
Sbjct: 1159 TVNVDIAGEISSIVNPDKEIIVGYLAMST 1187


>U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical
           protein C09B9.2 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 154 HFLYMIK-VQIMNK*KRRNDYSSLRLL*VGGEGIKTSQDLESMAFSIIHMRC-DIWRSQL 327
           HF+ ++  VQ++ K K+RNDY    ++    +  K  +DL  M   +I   C D   S+L
Sbjct: 174 HFIIVVNAVQMIAKSKKRNDYGEKVIV---EDVDKRRKDLYLMISDLISEICFDDKDSKL 230

Query: 328 RLSTTHDETDR 360
            L T  DET R
Sbjct: 231 HL-TIKDETGR 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,287,703
Number of Sequences: 27780
Number of extensions: 277121
Number of successful extensions: 844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)