Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0629
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   4.4  
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|...    26   5.8  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.6  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 368 LPSNIIRSVEDLPFVVYLPKLPPHRGRSWTNALLRPP 258
           LP NII+S ED   V   P  PP   RS+ + L +PP
Sbjct: 134 LPKNIIKSSED---VQIAPVTPPVHSRSF-DPLPKPP 166


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 167 PSRTYHHWQCFD*IST--SLCQRCSLEPG 247
           P+  YH W+ FD  ST   +C + S++ G
Sbjct: 406 PTSIYHAWKAFDVDSTIGGMCGKTSIDTG 434


>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 26  VIFCLLPNRVDRGESDQWVNRIKK 97
           V FCL+P+ ++R   +Q +N+ +K
Sbjct: 149 VTFCLVPDGLNRASFEQGINKWRK 172


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 450 RCLNLAYDIFKIKRIYTSSEQQHSDRRSTEQYH 352
           RC     ++ K+K + TS EQ   D +  E YH
Sbjct: 97  RCKESNVEMPKLKPVPTSWEQALQDNKPEEYYH 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,603
Number of Sequences: 5004
Number of extensions: 62677
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)