Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0629
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1766 + 39756155-39756973                                         34   0.12 
10_08_0107 + 14855606-14855914,14856068-14856142,14856920-14857021     31   0.64 
07_03_1162 + 24437396-24438652                                         29   2.6  
12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233...    29   4.5  
11_06_0326 - 22382001-22383248                                         29   4.5  
10_08_0129 - 15025076-15025858,15025951-15026283                       28   7.9  
10_05_0086 + 9025410-9025730,9025974-9026008,9026194-9026279,902...    28   7.9  
07_01_0349 + 2521006-2522439                                           28   7.9  
05_03_0416 + 13684604-13688050                                         28   7.9  

>01_06_1766 + 39756155-39756973
          Length = 272

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 209 STSLCQRCSLEPGIVCVGAGGGRLSSSGPYEEAVWEDIRQREDLPPSG-*YCSVDRRSEC 385
           ++SL  RC +   ++C G G G   +  P +E VW    + + LP       SVD  S C
Sbjct: 37  ASSLATRCDVPVAVICPGVGAGGEPTWWPSKEEVWAIATRYKSLPEKDRRKHSVDNASYC 96


>10_08_0107 + 14855606-14855914,14856068-14856142,14856920-14857021
          Length = 161

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 627 DDDSDDENADRCAVPSSWCQRARVTVPCGA 538
           DDD DD++AD  A P+    RAR      A
Sbjct: 58  DDDDDDDDADAAAAPAGLAARARAAADANA 87


>07_03_1162 + 24437396-24438652
          Length = 418

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 235 RTALTQ*CTNLIKTLPMVVGAGWQRVKHGSG 143
           R AL +    L ++LP+V G  W R+ HG G
Sbjct: 9   RRALAEGAGALGRSLPLVGGGSWTRLVHGGG 39


>12_01_1052 +
           10821964-10822064,10822434-10822607,10823086-10823346,
           10829833-10831798,10832114-10832515
          Length = 967

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +1

Query: 442 QASVNYLALYDGYPPQQSPPGDGHRATXXXXXCAARYRHSSALA 573
           Q S   LA  D  P   +P   G   +      AARY+H  A A
Sbjct: 37  QLSAPLLASVDELPTSSTPASSGSAESGGRTCAAARYQHGQAAA 80


>11_06_0326 - 22382001-22383248
          Length = 415

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 408 IYTSSEQQHSDRRSTEQYHPLGGRSSLCRISSQTASS*GPELDKRPPPAP 259
           +Y ++E     R   E Y    GR+  C++++  A    P     PPPAP
Sbjct: 226 VYRAAEDAR--RALEEPYRVFEGRTLHCQLAADPARKSKPRAPPPPPPAP 273


>10_08_0129 - 15025076-15025858,15025951-15026283
          Length = 371

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 273 PPPAPTHTIPGSSEQR*HSDVLI*SKHC 190
           PPP P   +P SS+   H   L+ SK C
Sbjct: 139 PPPPPIVVVPPSSDMHLHYGDLLSSKRC 166


>10_05_0086 +
           9025410-9025730,9025974-9026008,9026194-9026279,
           9026602-9026740,9028504-9028663
          Length = 246

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
 Frame = -2

Query: 603 ADRCAVPSSWCQR-----ARVTVPCGAASTPL--GRPVTI---TGRRLLWRVAIIQRKII 454
           A  CA+PSSW         R  +P    S P   G+P  I       +  +V++I RK++
Sbjct: 63  ASSCALPSSWLSSTSSLLGRCRLPMDVDSDPAAKGKPTQIDLEDQASMHLQVSVIDRKVL 122

Query: 453 DRCLNLAYDIF 421
               +L  DIF
Sbjct: 123 PSEFHLFSDIF 133


>07_01_0349 + 2521006-2522439
          Length = 477

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -1

Query: 382 FGPSVYRAISSARWKIFPLSYIFPNCLLIGAGAGQTPSSGPHAHNTWLKR 233
           F P V  A++ A     P+    P  LL GA A Q     PH    WL R
Sbjct: 228 FPPDVSAALADALPNCLPIG---PYHLLPGAAATQANDDDPHGCLAWLAR 274


>05_03_0416 + 13684604-13688050
          Length = 1148

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 253  HNTWLKRTALTQ*CTNLIKTLPMVVGAGWQRVKH 152
            H T L+R  ++  C NL+K     VG  WQ V H
Sbjct: 1109 HLTNLRRLNISG-CPNLVKRCEQEVGEDWQLVSH 1141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,870,046
Number of Sequences: 37544
Number of extensions: 522580
Number of successful extensions: 1869
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)