Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0629
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)                 31   0.86 
SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_50849| Best HMM Match : Galactosyl_T (HMM E-Value=0.066)            29   3.5  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         29   3.5  
SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)
          Length = 671

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = -2

Query: 462 KIIDRCLNLAYDIFKIKRIYTSSEQQHSDRRSTEQYHPLGGRSSLCRISSQTASS*GPEL 283
           K+ D CL L   I +  + Y +        +     HP  G++S   +  Q++ S   E 
Sbjct: 149 KLCDNCL-LPNHISRRCKTYKACLVSGCSEKHHSLLHPPPGQASQLPLQEQSSGSRAEEA 207

Query: 282 DKRPPPAPTHTIPGSSEQ 229
              PPPA   T P +S +
Sbjct: 208 SPPPPPALVATGPSASSR 225


>SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 654 NGLLFYSMFDDDSDDENADRCAVPSSWCQRARVTVPCGAASTP 526
           NGL      D+  D+ENA   AV  ++C    + +PC   + P
Sbjct: 374 NGLPILIFRDESEDEENAKTLAVCLNFCMADDLVLPCMPRNKP 416


>SB_50849| Best HMM Match : Galactosyl_T (HMM E-Value=0.066)
          Length = 147

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 338 DLPFVVYLPKLPPHRGRSWTNA 273
           DL   VYL  L PH+ +SWTN+
Sbjct: 93  DLRSQVYLDPLAPHKVQSWTNS 114


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +3

Query: 144 PLPCFTLCHPAPTTIGSVLIKLVHHCVSAVRLSQVLCAWGPEEGVCPAPAPMRRQFG 314
           PLPCF  C P    +  ++ +  H         QV C   P E  C  P P   + G
Sbjct: 323 PLPCFEECKPCTELLPKIIPECQHE-------QQVPCHIDPWEFKCSEPCPKTLECG 372


>SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 459 IIDRCLNLAYDIFKIKRIYTSSEQQHSDRRSTEQYH 352
           I D  ++  Y  F +++IY   EQQH+ R+   Q H
Sbjct: 217 IADTKVDRRYGEFFMRQIYKFDEQQHNKRQQQRQQH 252


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = +3

Query: 144  PLPCFTLCHPAPTTIGSVLIKLVHHCVSAVRLSQVLCAWGPEEGVCPAPAPMRRQFG 314
            P  CF  C P    +  V+ K  H         Q+ C   PE+  C  P P   + G
Sbjct: 1800 PRRCFQKCEPCKVLVAKVIPKCQHE-------QQIPCHVEPEKFKCQEPCPKTLKCG 1849


>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1111

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -3

Query: 320 YLPKLPPHRGRSWTNALLRPPRTQYLAQANSADTVMY*FNQNTANGGRCGMAEGKT 153
           YLP+      R  TN+  +P     L   NSA ++       TA+G    +  G+T
Sbjct: 214 YLPRRIDQSEREITNSCAKPNEETTLPSPNSASSITQEVQDGTASGANLIVHGGET 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,804,639
Number of Sequences: 59808
Number of extensions: 531880
Number of successful extensions: 1711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)