Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0629
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z78059-4|CAB01487.2|  995|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.     29   4.0  
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.     29   4.0  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    27   9.3  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    27   9.3  
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
           protein W09G3.6 protein.
          Length = 1125

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 678 GSERDTPPNGLLFYSMFDDD----SDDENADRCAVPSSWCQRARVTVPCGAAS 532
           GSE  TP +  ++ +  DDD    +   N   C +  SW   + +   CG A+
Sbjct: 745 GSEGPTPTSEHIWTNPLDDDVITPTSSSNCATCGMHRSWAATSLLMAVCGGAN 797


>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
           protein C34B4.1b protein.
          Length = 1099

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 320 YLPKLPPHRGRSWTNALLR 264
           YLP LP H+ R W N L++
Sbjct: 225 YLPALPSHQPRQWENRLIQ 243


>Z78059-4|CAB01487.2|  995|Caenorhabditis elegans Hypothetical
           protein C34B4.1a protein.
          Length = 995

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 320 YLPKLPPHRGRSWTNALLR 264
           YLP LP H+ R W N L++
Sbjct: 121 YLPALPSHQPRQWENRLIQ 139


>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
          Length = 1045

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 320 YLPKLPPHRGRSWTNALLR 264
           YLP LP H+ R W N L++
Sbjct: 171 YLPALPSHQPRQWENRLIQ 189


>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
          Length = 1099

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 320 YLPKLPPHRGRSWTNALLR 264
           YLP LP H+ R W N L++
Sbjct: 225 YLPALPSHQPRQWENRLIQ 243


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 198  LIKLVHHCVSAVRLSQVLCAW 260
            L++LVH CVSAV  +Q+   W
Sbjct: 1831 LLELVHSCVSAVLQTQLRLCW 1851


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 198  LIKLVHHCVSAVRLSQVLCAW 260
            L++LVH CVSAV  +Q+   W
Sbjct: 1831 LLELVHSCVSAVLQTQLRLCW 1851


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 383 IRTVGLPSNIIRSVEDLPFVVYLPKLP-PHRGRSWTN 276
           I+  G P N   +++D+PF+VY P+     RG  W N
Sbjct: 259 IQIGGTPWNKKIAMKDVPFIVYSPQFEHVIRGGDWEN 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,484,740
Number of Sequences: 27780
Number of extensions: 389431
Number of successful extensions: 1125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)