Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0629
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27580.1 68418.m03303 MADS-box family protein contains Pfam p...    30   1.6  
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi...    29   2.8  
At4g23220.1 68417.m03349 protein kinase family protein contains ...    29   3.7  
At1g50840.1 68414.m05717 polI-like DNA polymerase, putative simi...    28   6.5  
At3g43350.1 68416.m04582 helicase-related low similarity to SP|Q...    27   8.6  

>At5g27580.1 68418.m03303 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL89
          Length = 223

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 547 VRRSLNPLRSPCDHHRE---ETAVAGSHHTTQDN*QMPESRLRHFQDKAHIYKF 395
           V  + NPL SP DHH +   E  V G  +T QD   +  S L + Q K  ++ +
Sbjct: 157 VSSTTNPLSSPEDHHHQQWTEPLVTGVSNTEQD---LSTSPLSNHQSKYSVFVY 207


>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1322

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 272 GRLSSSGPYEEAVWED-IRQREDLPPSG*YCSVDRRSECCCSELVYMRFI 418
           G  S   P +  + +D I++  +L P+G  CS+D   EC    +++++ +
Sbjct: 555 GESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLECTIKHMLFLQSV 604


>At4g23220.1 68417.m03349 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 542

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 379 GPSVYRAISSARWKIFPLSYIFPNCLLIGAGAGQTPSSGPHAHNTWLKRTALT 221
           G  VYRA    RW++FP S  F    L          + P   NT  K+ ++T
Sbjct: 107 GGIVYRASCVFRWELFPFSEAFSRISLAPPPQSPAFPTLPAVTNTATKKGSIT 159


>At1g50840.1 68414.m05717 polI-like DNA polymerase, putative similar
           to PolI-like DNA polymerase [Oryza sativa] GI:19912795
           contains Pfam profiles PF01612: 3'-5' exonuclease,
           PF00476: DNA polymerase I family A
          Length = 1050

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 216 HCVSAVRLSQVLCAWGPEEGVCPAPAPMRRQ-FGKIYDKGKIFH 344
           H   AV   QV+  W PE G    P P+ +  FG    K K+ +
Sbjct: 838 HVREAVENGQVILEWHPEPGEDKPPVPLLKDAFGSERRKAKMLN 881


>At3g43350.1 68416.m04582 helicase-related low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 830

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 413 SAYIQVPNNNIRTVGLPSNIIRSVEDLPFVVYLPKLPPHRG 291
           +AY+    NN+R  GLP++ +R     P V+ L  + P++G
Sbjct: 489 AAYLADFLNNVRVYGLPNHCLRLKVGCP-VMLLRNMDPNKG 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,525
Number of Sequences: 28952
Number of extensions: 361679
Number of successful extensions: 1122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)