Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0628
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...   109   3e-25
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...   102   5e-23
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    31   0.10 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    29   0.42 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   3.9  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   5.1  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    25   6.8  

>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score =  109 bits (262), Expect = 3e-25
 Identities = 58/141 (41%), Positives = 87/141 (61%), Gaps = 18/141 (12%)
 Frame = +2

Query: 2   AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPLTI 181
           +++ YDQ L ED + N+MQE+L L+DSICN+ WF+++++ILFLNK DLF+ K+  SP+  
Sbjct: 266 SLAGYDQCLVEDNSGNQMQEALLLWDSICNSSWFSESAMILFLNKLDLFKRKVHISPIQK 325

Query: 182 CFPEYTGAQEYGEAAAYIQAQ------------------FEAKNKSTTKEIYCHMTCATD 307
            FP+Y   QE G    ++Q Q                  FE+ N+  ++  YCH T ATD
Sbjct: 326 HFPDY---QEVGSTPTFVQTQCPLADNAVRSGMYYFYLKFESLNRIASRSCYCHFTTATD 382

Query: 308 TNNIQFVFDAVTDVIIANNLR 370
           T+ +Q V  +V D I++NNL+
Sbjct: 383 TSLLQRVMVSVQDTIMSNNLQ 403


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score =  102 bits (244), Expect = 5e-23
 Identities = 53/131 (40%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
 Frame = +2

Query: 2   AMSEYDQVLHEDETT--NRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIRRSPL 175
           ++++YD+ L+E      NR+ ES+ LFDSI N++WF  +SIILFLNK DLF +K+   P 
Sbjct: 224 SLNDYDKKLYERAAPERNRLVESISLFDSIINSQWFMHSSIILFLNKFDLFRKKLEHVPF 283

Query: 176 TICFPEYTGAQEYGEAAAYIQAQFEAKNKSTTK-EIYCHMTCATDTNNIQFVFDAVTDVI 352
              FP+Y G         YI   F   + +  K  IY H+T A DT+NI+ VF AV + I
Sbjct: 284 QDYFPQYEGKNSVKSITRYILWLFVNPSINRAKHNIYPHITTAVDTSNIKVVFSAVKETI 343

Query: 353 IANNLRGCGLY 385
           + ++L+  G++
Sbjct: 344 LQHSLKEAGMF 354


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 329 TQTGCCSCR-WRTSCGSRSPSWWTC-SSLRTAPGCTRPPR 216
           T+TGC +CR  R  C  R P  + C  S R   G T  PR
Sbjct: 42  TKTGCLTCRKRRIKCDERKPICYNCIKSKRQCEGYTHFPR 81


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 622 VFRI*FEMTSCSLLESCNKLDTIVSGL 542
           V  I  +   CSLL  CN+LD + SGL
Sbjct: 136 VLHILMKENKCSLLYPCNRLDRLTSGL 162


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 292 DVRHRHEQHPVCVRRGDRRDH 354
           D  +RH+Q  +CV   DRR H
Sbjct: 513 DALNRHKQRNICVGGVDRRQH 533


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 250 SEEQVHHEGDLLPHDVRHRHEQH 318
           S++ +HHEG    H   H H  H
Sbjct: 290 SDKDLHHEGHHHHHHHHHHHHSH 312


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 381 RPQPRRLLAMITSVTASNTNWMLFVSVAHVMWQ*ISFVVDLFFASNCAWMYAAAS 217
           R QP+R  A+   VTA N  W  F     V+ +  S +  + F++   + +A  S
Sbjct: 7   RLQPQRFAALPNPVTAENKFWRSF--KVPVVAKEYSAITSIHFSAESPYDFAVTS 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,278
Number of Sequences: 5004
Number of extensions: 47016
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)